LOC120547149 (LOC103361227,LOC102782649)


Basic Information

Item Value
gene id LOC120547149
gene name LOC103361227,LOC102782649
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4360202 ~ 4400599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782615.1
cccgtctctctctctctgcagagcaGCCGGCGCGCTTGTTCGCCACAGTCCCTCGACTCACACTCTCCTTCCTGCCTCTGACAGGAAGATGGTACCGTGCGCAGAGTGTCCTGCACGCGAACCGAAGGCGTCACTCACCGACTCGCTGCGGGACTTTTAAACTCCATCATGCCGTGTTACGCCAGGTTTCTGTTTTTACTTCTGTGTTTGATCCTGCTCGGGGAGTGCAGGAGACCCAAAAGTAGGAAAAAGCGGTGGTCCGCGCCGGCGGAGAATCACAAGCCGGGCACTCCTCTGTCAAAGAAGGTTGCAGATGGAACCAAATCCCGAAAGATGAAGACCACCCACCTTCTGCGCATAGACGAGCATGACTTTACCATGAGGCCCGCCTTCGCAGGTCCAGCTGTCCCTGTTGGAGTGGATGTGCAGGTGGAGAGCTTGGACAGCATATCAGAGGTGGACATGGACTTCACCATGACCCTGTATCTAAGGCACTACTGGAAGGACGAGAGGCTTGCCTTCCCAAGCTCCACCAACAAGAGCATGACATTTGACGGGCGCCTGGTGAAGAAAATCTGGGTGCCTGATGTGTTCTTTGTCCACTCCAAGAGGTCTTTCATCCATGACACCACCACTGACAACATCATGCTGCGGGTGTTTCCGGACGGTCACGTCCTGTACAGCCTGAGGGTTACAGTAACTGCTGCATGCAACATGGATTTCAGTCGTTTTCCTTTGGACTCGCAGACATGCACGCTGGAGCTGGAGAGCTATGCTTACACAGATGAAGACCTGATGCTGTATTGGAAAAGCGGTGATGAGTCCCTGAGCACTGATGACAGGATTTCTCTGTCTCAGTTCCTCATCCAGAAGTTTCACACTACTTCCAGACTGGCTTTCTACAGCAGCACAGGCTGGTACAACCGTCTGTACATCAACTTCACTCTGCGGCGTCACATCTTCTTTTTCCTGCTGCAGACCTACTTCCCAGCCACTCTGATGGTCATGCTGTCCTGGGTGTCCTTCTGGATCGACCGCAGGGCCGTCCCTGCCAGAGTCTCATTAGGTATAACCACAGTGCTCACCATGTCTACCATCATCACTGGAGTCAACGCCTCCATGCCCAGGGTCTCCTACATCAAAGCTGTGGATATTTACCTCTGGGTcagttttgtctttgtcttcCTGTCTGTGCTCGAATATGCTGCCGTCAACTACCTGACGACAGTGAGGGACGGTAAAGACCGCAAGCTCAGAGAAAAAGCCAGAGAACAGTCCCAGACACTCCCCTGCACCTGTGGCATGTCCCACGCCAGGACCATGATGCTAGACGGAACATACAGCGAGGCGGACGCCAACAGCCTGGCGGGGTACACAAGGGCCTCCATGGCACCTGAGGATGTGTCGGAAAAACAGGAGCGAATGGTAGTGCATCTCTCCCTGGACACCGAGCCCACGGGGACCAAGAAGAAGGGCATCCGCGGCTTCCGGATTATCCAGAACACTCATGCCATTGACACCTATTCTCGCATGATATTCCCTGGCGCCTACATCCTGTTTAACCTGATCTACTGGTGTGTGTACTGCTGATTGTGTGCATTCTAGCCTAAACTGTAGCAGTGTATGAAAAAACTGCGGAATCTTTTAGTTGTCCTTAGAAGAGGGATACAGTTGTTTCCCTTCTGCATGTTCAGGTGGAGCAACAAGTTTGGCAGGATGGTTGAAGAATATCAGAGGCTGCTGGGTGCGAATAGCTCCAACTCTGGCTCACATGTCACCGCTGGACTGAACCACTTATACAGCTTCCCCTCCTTTACATAATTATATCACAAGCTCATATTTACCCACATCATACGCCAACAACTGGTTGGCTGGTTGTACAAATTGTGCTCCCTAGTCTAACTAGTCCAATGGCGGatgtacaaaaataaaaacagactaaTTAACTCTCCAGCTCTGCCTACTATTAATATGCCCAACCCAAAACAGACATAACTGCCTATCAGACATCATGATGTCTTGTAGCcaactttttgtttgtttgcaatttatttcaacaacatTTTTGTCCTAATTTAAGCATTAACATTTTCCTATCTTTCCATTTAAACATGTTTCTCTGCTACACTCATTACTGAagctttagttgtttttttaaaattgtaaaaaaaatatgctgATGTAATCTGCCATTTTTCAAGCCCACTTATTTTCATAATTGTATCTAGGTAGCATATGTAGGAAGATGGTGCCCCTATTCTTAATCCCGCCTACTAAACTCAGATTAAGCAATTGTTTTTCCAGCCAGGGAAAGTAACACCAGATTTATTTGATTGGCTAATGGAATTGGAGAAGCGAGTGATCTGAAACAAGGCTGCAGAGGATCTACAAAGAGGATCTCCACAGCAAGCTGAAAAACACAAACCATGGACATCTTGTCACCTTATCAAGTTGGTTTTAACTAATGTGTTACCAGTTGTGCATTTACACATCCAGTAGACACAGAGCAATATTAGCGTTCATGTGGTTTTTGGCAACACAACTTATGTTGTGTGGttgttgtatgttgtatgtctccatcatcttctgagaaaaatatgtttaatgAAGTGCCATATGTCAGTGTCATGAATATATTGATGGGCAGAGTTTGTAGATAGTCATGAAAGCTTTGCACAACTGAAGAACTTACTGTCTATGTCTAACTGAAGTTGGACTGTTCCTATCTAAACCATAATCAAATGTTTGTGCTACCAGCCCCTGCCTGTACTTCCCTAAATACCACTCTCTTCTCTGAAGCTCTCTATCTTCATGATCAAACTGTCAAAATAACAAGAGTAGATCATTCGGCTGCTATTGCCTCTGTAAACTTTGGATCTGACTGAGTCGCATAGCTAAATGTGTCCAGAGCAGACGGCTTATGAGGCAGTAACTGAGCTAAATACCAGACCTTCTTCCCTTAACGGCGCTCCTACTACAGTGACAACATTTCAATTAAAGTAACAGTAAATGCTGCTGCCCTGTACAGTATTACACATGGACTACCGTTATTAACTACCGGCATTAACAAGACTAAAGCTACAGGACTAACAGGATGTTACTACTGTATAGGTTTTgaagcaacacacacaaaccactgtTGCTGAGTaaagtctttatttatttatgtattcacAGCTTGTTCATTCATTGAGTTTCTTTtatttgatatttatttttagtgTAGCAACAGATCCATGTGCCATTATACCTTAAGTTGGCAAAGATGCACATAACAGGGCTTGTATAGAAACAGCTTGATGCATGCTGCAGACGTGCAATACTGTGTCTTTCTAGATGTGTATTTCTTAGAAGGgacttatcaacatggaaagcTTTACCAGTGATGTAACCAACTTGAACCGCCTTAAGTGAACATTTTTTATGCACAAACATGGTTTAATGGCCATAtgctttttcatttgtttgtttgagtACTATGAGGGACTGCATTGTTATATTGGGGAGTTCTTAGCAGAATCCCATCCAATTCAGCATCAAATCATGTGGGTAAATAGTAAACTAGAAGCTATCCCTATGGCTGGCTGTGCTGTGGTGTGTGACTTCACCCACCCACAAGTGCTGCAGGTTTTTcactgcttccagtctttatgaaaagctaggctaaccacatCTTGGCTTTAGCTCCATACTTAttgcacagacatgagagtggtattgatcttttcATCTAACTTTCTGCAAGAAAGTGAAAAGGCACATCTCAGAAGATGTCAAAGTACTCTTTTAAGTACTCTTTTTAAGTTCTCGACCTGCTTCATAATCTTTTCAGCATCCAATATTGGGCTTTTGCTTTATGGCAGCAATCATTTGCCAAAActcaatgtgatttttttttatttatttacttattttaatgGTGCATATCATTTTGGAATGATACTCTCATAATAGCAAGTCAGATTTCTCAGAGcacaaaaccaaaacaagaaaaacagatCTGTCAGCTTCCAAACCAACATCACTTCAACCTTCATCTTCAGAATGTAATGCTGTCAGAGCAAATTTCATAAATAAAGACTTTCTTTCAAATGCG

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit rho-2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782615.1 True 4096 mRNA 0.44 9 4360202 4400599

Neighbor

gene id symbol gene type direction distance location
LOC120547177 NA coding downstream 163842 4195143 ~ 4196360 (-)
LOC120547172 NA coding downstream 175244 4177573 ~ 4184958 (-)
trnad-guc_28 NA coding downstream 181262 4178869 ~ 4178940 (-)
ephx1 ephx1,LOC102787086 coding downstream 469552 3884965 ~ 3890650 (-)
LOC120547034 LOC104954367 coding downstream 475589 3875160 ~ 3884613 (-)
ube2j1 ube2j1 coding upstream 7389 4407988 ~ 4475102 (-)
LOC120547180 NA coding upstream 80230 4480829 ~ 4485479 (-)
cfap206 cfap206,LOC104962646,LOC104951787 coding upstream 233944 4634543 ~ 4654939 (-)
LOC120547250 LOC104919706,LOC106571281 coding upstream 255257 4655856 ~ 4681570 (-)
si:ch211-241j12.4 LOC103354013 coding upstream 284934 4685533 ~ 4702724 (-)
G182137 NA non-coding downstream 76043 4283960 ~ 4284159 (-)
trnad-guc_27 NA non-coding downstream 185176 4174955 ~ 4175026 (-)
trnad-guc_26 NA non-coding downstream 189049 4171082 ~ 4171153 (-)
trnav-aac_24 NA non-coding downstream 197519 4162611 ~ 4162683 (-)
trnav-aac_23 NA non-coding downstream 199808 4160322 ~ 4160394 (-)
G182156 NA non-coding upstream 3426 4404025 ~ 4404267 (-)
G182182 NA non-coding upstream 127417 4528016 ~ 4529058 (-)
LOC120546262 NA non-coding upstream 145569 4546168 ~ 4554488 (-)
G182202 NA non-coding upstream 190194 4590793 ~ 4591004 (-)
G182276 rmdn3 non-coding upstream 319318 4719917 ~ 4721769 (-)
G182121 NA other downstream 194206 4163358 ~ 4165996 (-)
trnav-aac_21 NA other downstream 204370 4155760 ~ 4155832 (-)
trnav-aac_20 NA other downstream 211224 4148907 ~ 4148978 (-)
G182102 NA other downstream 259722 4100010 ~ 4100480 (-)
G182059 NA other downstream 446187 3908547 ~ 3914015 (-)
smim8 smim8 other upstream 345174 4745773 ~ 4803492 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other upstream 910907 5311506 ~ 5313715 (-)
G182474 NA other upstream 1389690 5790289 ~ 5792938 (-)
G182502 NA other upstream 1510713 5911312 ~ 5911909 (-)
cgrrf1 NA other upstream 1832143 6232742 ~ 6269143 (-)

Expression


Co-expression Network