syndig1l (LOC108231752,LOC106536771)


Basic Information

Item Value
gene id syndig1l
gene name LOC108231752,LOC106536771
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15347760 ~ 15384587 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782714.1
TCGGGGAAAGTAAGCGCATGCATGCAGGGAGGGTGGACgttgttttctctctttgcGCGCTTGCGAAGCGCATCGGGCTCTCCTCTCTCCAACTGCGCCTGCAGAattcatccctccctccctgtttctctctctctctcgctatcCCTCTCTCACAGAAGGTGTTTTAACTTTACGAAGGCGACAACATTTCATTCTCAAGGTAAACGCTTTATTGGGAAGGGAGACCTTgtaggaggagagggagataaCGAGACTGTGACGGCGGCATTTTGCCGAGCGGAGACCTGTTCAGCCCGAAATGATTGACTATTTCTTGAAATGAGAAAGTCTTAGAAATGTCTTTTTCCCTGGGCGACACCGTCAGCATCACAGCCACAATGTACAGGCGGAAACAAGCGAGTGTTTGCATCCTCCAAACAATATTTGGATTGTCAAGAACTCAAAGATCTGAGAGTGCTGAATGCTGAATGTCATTAACAACTTCACTGAAATCAGCGCACGCCATTGAGGAACACATCCTGTTTTATTTCACCTGTCACTTTCCCATCTCTTTGCAAGAGCTAACATCACTAAGAAGCTCCCCCTGTGTACCGTTTGACACCAGTTGCTATGGAGAATCTCAGTGAGCTCCAGAACCCGTTGTTGGACAAAAACAGTAAGCACATGGTCAACGGTTATGGGGGTGACTTCCCTAATAACCAGTACCAGGAAAACATTATTAATTACTTTGCTggtggaggagagggaggaggaggaggaaaggtgAATAACGGCAACGTAGTGAGCGGAAGTAGTTACAATACCAATGGGAAGATGAAATCTCAGCAGCTTTTGGACGCCACCTCACTGCATCTGGCGGTAGAGGCATTCTACAGGCCTAACTTCATCCTGTACAAGGAGGACAGTGGCAGCATTAAGGCTAAGGAATATAAAAGCGAGTGCTGTGAGACCACATTCACAGAGAAGAAGGCGAAGGAGGCATCCAACACAGCGGGGGCGGACACGCCTGGCACCGAGGATCCCCAGGCGAAGCTGCTGGAGGACGGTGAACACATCAAGATCCAAACCGTTTCCTATGAGGTCGAGGAGGAGGAGTATGTGGAGTATGAGACTGACTGCTCCAGCGACAGCGAGAGCGAGGACAACTTCATAGTCGTCCCTCCACGAGACCACCTGGGCCTGGCCATCTTCTCCATGCTCTGCTGTTTCTGGCCTCTGGGGATCGCAGCATTTTACTTTTCACAGGGgACCACCAAGGCAGTGAACAAAGGTGACTTCCCACTGGCCAACATCGCCTCCAGACGGGCTTTGTTCCTCgctgctctctccatcaccatAGGCACCGGTGTGTATGTGGGGGTGGTGGTAGCTCTCATTGCCTACCTTTCTAAACCAGGACACATATAGCAGCTGCACCTTCCCTCCAACACACCTCCCAGGAGCCCAGGAAAAGAACAACCTCCCCCCCTCCCATGGGAACGGCATTGCTCCTGCACACTTCGAGGAAATGTTTTTTGGTTTCGGGGATGCACAGTTTTTTCCCCTCCGCCTTCCTTTCTTTCCAGCTTTCTCTCCCTACAGGCCCTCTGGCAGCCACCATTAGCCACAGTGACTGGAGAGAGGTCAAGCTGGAGGGTGAGAAGAAGGGGAATTGGGGATAGacaaagtttttcttttgttgagaCAGTGAGAGGGTTTGAGTAATGGAAGTATTCCATGTTGGAGTGCAGTTTGCATCCCCTGTTGGCTTCATCCtctttttcctggttttaactTCCAAGACCCCGACAGACACATCgaggagaagagacagaggCGATAACGCTGCACACTTAAGCAATTATTAAAGAGCAGAGGTATAGGTGGGTTAGAAATTAACACAAAATCACTCTTAAACCAACTCAGTGTCATTGCTATTTGAGCTGCAGTTAAAATAAGAGTCTCTCTGTGGAGTCCCGACTCCTGTCATCTGACTTGAGCTGCCCTCATCGACTCAAAAACACCAAGGCTGCATTTGTCTCTCGGCTCACTGCCTCACAGCAGATGACCACACTCGCATTTTCTGAAATCGTGACAAAGGAGGGTTTTCCTTTTGCTGAGAAACtttagaaaagaaaatacagacCTGCTAATTATAATTTAAATCAAAGAAGCTCtcagaggaaaaataaaaagatcaaACACAATCAGACGCTGTTTCTGACTCATTGAACAATATGCACTGGCATGAATTACAAGAATCTCAATGGAGCCTCAGGCCTGTATTTTTACCTCTGAGGTGTCCATCAAAGACAGGCTCTGAAAGCTAACAAAATCTGTTTATGCCAGATATGGTTGCCTACGTACACGCaaatttgctttgtttttatgttgtctTTTTGTGTTCCCTGCTGTCTAACGGCACCTTGATTAATCTTGCTTTAAGGAATGTTCATTTGTAGCCTTTGAAGTAAAGCACATGCGAGGTGGCCAGATGGTCAGAATTTCAGAAGGAGGGCGCCTGAGTAGCTCACCTAGTAGAGCGCGTGCCCAtatgtatagaggtttactccttgacgcagtagtcgctgcggccctttgctgcctgTTGTTCcttatctctctcccccttcatgtcttcagtggtcctatacaaaataaaagcctaaaatacccaacaaattctttaaaaaataaataaaaataaaaaaaagaatttcagaGGGAAAGGGTGCACATTGTCTCCCTAAAAACACTGCATCTGCTGaggcaatatgaaatgaaacatCAGCCATTCACAATGGGCAATATAGTTATGAATCAGGTAGGTAATATCATTAAAAGGCAGGCCTTACGTGTCCTCCAGGGCTGCGCATATAAACAAAGTGTCGCAGTGTGACAGCTTTGAATTTAGCCTTGATCAATTACTCTTTGCATGACTCTAGCTGTATGCCAGCAGTATTACTGCTACGCATGATTGATTGGATTGAGAACTCTTTTTTGTCAGATCATAAAAaagcttaaattaaaattgaTCAGGCTCATATTTTGTGCAATGCTTAAACCCACATTCCCCAATTCGGCTATTAAAACAGAGGACATGTCACAGTGATAAAGCATTGAGACACTTCAATTTGCTCCTTCACAATTTCAAGATTTTTTTACTTATTGTATGAAGGgcttattactttttttgttttgatattgtaGTTGCACGCCGATGCTAGTCCATGCCTCAAGAGGTGACATTATACACTTAGTTTCTCTGCACAGGTACTGCATTAGTCATACCTGACATTTATGGTGCACAATTAGCTCCCCATAATGGCTTTTTCTGAAGGAATGTGTACTCTCTGGAGCATAGCCCTAAAATAGCACAACCACATTAATTTCACTAATAAGCAACTTTTGGCGTCACTGGTTGCTGTCAAAAGCTGCAAGTAAACAATCAATTTAGACATCCACGGctctgtgaacattttaaaataaccaTGTAAGTCGGTTCTGCTGTGCTAATGAAGAGCGAATATTGCCCTTATTCTCCACAAGGGGACATTTCCAGTGCGCTTTGTTTAAATTAAACGGCAGCCAAGACTCTCAAGACTTTCCTTTGAATTGTATATTTGGCTGCCTGTATGAATAAACATCAAGGCAGTCAGTTAAGTACAATAAGCTAAATGCCGATTGATTTCTAGGTATTTGTTTGGGGCCCTAAGATTCACCTCATTGAGTTTCTGGTCATGTGAGAAGATGATCAATACACCCTTATAACCTCTGAGCCCTTCTGACCACATCTTCCAGTGGTAACTCATGAGCTACCGATTCTTCGTCAGTGTACGCACACATCATGGCCATCACTGTAACTATACTGAAATACTCTGTACACCTGCTTTCATCTCTCGGAGAAAGTTTTATTGCTGATAACGATGAACATGCTTTGTGTTATGTAGCGTGTCATTCAAAATGATGTGTTTTTATCTGGCTTCTTTGGCAACCTGGTATTGTGCAATGTGTTACAACAGTACGTGGGTTTCAATGCTGTTGTTATTTCCTTCTCATCGTGATGAGTTAATGTACAGATCCACGCAACAAAGACGTTTGCTGAATGCGTTGCTCAATGCCAGGGTGACAGCGCTCTATTTGTGTCGTGCTCTTAAGCCGAATTAAAGAAGATGACATTGTTTTATTAGGTTTTGGGGATTTTGTTTCCTATCTTGTGTGAAGGCAACATGTACATAGTGCaaataaagacatgttcaaATGTAATGACAAATAAATCAGAAAGGAAGGATGTCCTTTCTTAAAAGCaaaa
>XM_039782715.1
TCGGGGAAAGTAAGCGCATGCATGCAGGGAGGGTGGACgttgttttctctctttgcGCGCTTGCGAAGCGCATCGGGCTCTCCTCTCTCCAACTGCGCCTGCAGAattcatccctccctccctgtttctctctctctctcgctatcCCTCTCTCACAGAAGGTGTTTTAACTTTACGAAGGCGACAACATTTCATTCTCAAGATCTGAGAGTGCTGAATGCTGAATGTCATTAACAACTTCACTGAAATCAGCGCACGCCATTGAGGAACACATCCTGTTTTATTTCACCTGTCACTTTCCCATCTCTTTGCAAGAGCTAACATCACTAAGAAGCTCCCCCTGTGTACCGTTTGACACCAGTTGCTATGGAGAATCTCAGTGAGCTCCAGAACCCGTTGTTGGACAAAAACAGTAAGCACATGGTCAACGGTTATGGGGGTGACTTCCCTAATAACCAGTACCAGGAAAACATTATTAATTACTTTGCTggtggaggagagggaggaggaggaggaaaggtgAATAACGGCAACGTAGTGAGCGGAAGTAGTTACAATACCAATGGGAAGATGAAATCTCAGCAGCTTTTGGACGCCACCTCACTGCATCTGGCGGTAGAGGCATTCTACAGGCCTAACTTCATCCTGTACAAGGAGGACAGTGGCAGCATTAAGGCTAAGGAATATAAAAGCGAGTGCTGTGAGACCACATTCACAGAGAAGAAGGCGAAGGAGGCATCCAACACAGCGGGGGCGGACACGCCTGGCACCGAGGATCCCCAGGCGAAGCTGCTGGAGGACGGTGAACACATCAAGATCCAAACCGTTTCCTATGAGGTCGAGGAGGAGGAGTATGTGGAGTATGAGACTGACTGCTCCAGCGACAGCGAGAGCGAGGACAACTTCATAGTCGTCCCTCCACGAGACCACCTGGGCCTGGCCATCTTCTCCATGCTCTGCTGTTTCTGGCCTCTGGGGATCGCAGCATTTTACTTTTCACAGGGgACCACCAAGGCAGTGAACAAAGGTGACTTCCCACTGGCCAACATCGCCTCCAGACGGGCTTTGTTCCTCgctgctctctccatcaccatAGGCACCGGTGTGTATGTGGGGGTGGTGGTAGCTCTCATTGCCTACCTTTCTAAACCAGGACACATATAGCAGCTGCACCTTCCCTCCAACACACCTCCCAGGAGCCCAGGAAAAGAACAACCTCCCCCCCTCCCATGGGAACGGCATTGCTCCTGCACACTTCGAGGAAATGTTTTTTGGTTTCGGGGATGCACAGTTTTTTCCCCTCCGCCTTCCTTTCTTTCCAGCTTTCTCTCCCTACAGGCCCTCTGGCAGCCACCATTAGCCACAGTGACTGGAGAGAGGTCAAGCTGGAGGGTGAGAAGAAGGGGAATTGGGGATAGacaaagtttttcttttgttgagaCAGTGAGAGGGTTTGAGTAATGGAAGTATTCCATGTTGGAGTGCAGTTTGCATCCCCTGTTGGCTTCATCCtctttttcctggttttaactTCCAAGACCCCGACAGACACATCgaggagaagagacagaggCGATAACGCTGCACACTTAAGCAATTATTAAAGAGCAGAGGTATAGGTGGGTTAGAAATTAACACAAAATCACTCTTAAACCAACTCAGTGTCATTGCTATTTGAGCTGCAGTTAAAATAAGAGTCTCTCTGTGGAGTCCCGACTCCTGTCATCTGACTTGAGCTGCCCTCATCGACTCAAAAACACCAAGGCTGCATTTGTCTCTCGGCTCACTGCCTCACAGCAGATGACCACACTCGCATTTTCTGAAATCGTGACAAAGGAGGGTTTTCCTTTTGCTGAGAAACtttagaaaagaaaatacagacCTGCTAATTATAATTTAAATCAAAGAAGCTCtcagaggaaaaataaaaagatcaaACACAATCAGACGCTGTTTCTGACTCATTGAACAATATGCACTGGCATGAATTACAAGAATCTCAATGGAGCCTCAGGCCTGTATTTTTACCTCTGAGGTGTCCATCAAAGACAGGCTCTGAAAGCTAACAAAATCTGTTTATGCCAGATATGGTTGCCTACGTACACGCaaatttgctttgtttttatgttgtctTTTTGTGTTCCCTGCTGTCTAACGGCACCTTGATTAATCTTGCTTTAAGGAATGTTCATTTGTAGCCTTTGAAGTAAAGCACATGCGAGGTGGCCAGATGGTCAGAATTTCAGAAGGAGGGCGCCTGAGTAGCTCACCTAGTAGAGCGCGTGCCCAtatgtatagaggtttactccttgacgcagtagtcgctgcggccctttgctgcctgTTGTTCcttatctctctcccccttcatgtcttcagtggtcctatacaaaataaaagcctaaaatacccaacaaattctttaaaaaataaataaaaataaaaaaaagaatttcagaGGGAAAGGGTGCACATTGTCTCCCTAAAAACACTGCATCTGCTGaggcaatatgaaatgaaacatCAGCCATTCACAATGGGCAATATAGTTATGAATCAGGTAGGTAATATCATTAAAAGGCAGGCCTTACGTGTCCTCCAGGGCTGCGCATATAAACAAAGTGTCGCAGTGTGACAGCTTTGAATTTAGCCTTGATCAATTACTCTTTGCATGACTCTAGCTGTATGCCAGCAGTATTACTGCTACGCATGATTGATTGGATTGAGAACTCTTTTTTGTCAGATCATAAAAaagcttaaattaaaattgaTCAGGCTCATATTTTGTGCAATGCTTAAACCCACATTCCCCAATTCGGCTATTAAAACAGAGGACATGTCACAGTGATAAAGCATTGAGACACTTCAATTTGCTCCTTCACAATTTCAAGATTTTTTTACTTATTGTATGAAGGgcttattactttttttgttttgatattgtaGTTGCACGCCGATGCTAGTCCATGCCTCAAGAGGTGACATTATACACTTAGTTTCTCTGCACAGGTACTGCATTAGTCATACCTGACATTTATGGTGCACAATTAGCTCCCCATAATGGCTTTTTCTGAAGGAATGTGTACTCTCTGGAGCATAGCCCTAAAATAGCACAACCACATTAATTTCACTAATAAGCAACTTTTGGCGTCACTGGTTGCTGTCAAAAGCTGCAAGTAAACAATCAATTTAGACATCCACGGctctgtgaacattttaaaataaccaTGTAAGTCGGTTCTGCTGTGCTAATGAAGAGCGAATATTGCCCTTATTCTCCACAAGGGGACATTTCCAGTGCGCTTTGTTTAAATTAAACGGCAGCCAAGACTCTCAAGACTTTCCTTTGAATTGTATATTTGGCTGCCTGTATGAATAAACATCAAGGCAGTCAGTTAAGTACAATAAGCTAAATGCCGATTGATTTCTAGGTATTTGTTTGGGGCCCTAAGATTCACCTCATTGAGTTTCTGGTCATGTGAGAAGATGATCAATACACCCTTATAACCTCTGAGCCCTTCTGACCACATCTTCCAGTGGTAACTCATGAGCTACCGATTCTTCGTCAGTGTACGCACACATCATGGCCATCACTGTAACTATACTGAAATACTCTGTACACCTGCTTTCATCTCTCGGAGAAAGTTTTATTGCTGATAACGATGAACATGCTTTGTGTTATGTAGCGTGTCATTCAAAATGATGTGTTTTTATCTGGCTTCTTTGGCAACCTGGTATTGTGCAATGTGTTACAACAGTACGTGGGTTTCAATGCTGTTGTTATTTCCTTCTCATCGTGATGAGTTAATGTACAGATCCACGCAACAAAGACGTTTGCTGAATGCGTTGCTCAATGCCAGGGTGACAGCGCTCTATTTGTGTCGTGCTCTTAAGCCGAATTAAAGAAGATGACATTGTTTTATTAGGTTTTGGGGATTTTGTTTCCTATCTTGTGTGAAGGCAACATGTACATAGTGCaaataaagacatgttcaaATGTAATGACAAATAAATCAGAAAGGAAGGATGTCCTTTCTTAAAAGCaaaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23906 SYNDIG1L; synapse differentiation-inducing gene protein 1-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782714.1 True 4294 mRNA 0.44 4 15347760 15384587
XM_039782715.1 False 4048 mRNA 0.44 4 15347760 15384587

Neighbor

gene id symbol gene type direction distance location
slc25a47a slc25a47 coding downstream 71181 15272178 ~ 15276579 (-)
LOC120546952 LOC103369945,LOC104955612 coding downstream 146670 15199429 ~ 15201090 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding downstream 219267 15121829 ~ 15128493 (-)
LOC120546409 mdga2 coding downstream 418098 14792113 ~ 14929662 (-)
fkbp3 fkbp3 coding downstream 641324 14703467 ~ 14706436 (-)
ino80 ino80 coding upstream 221481 15606068 ~ 15652295 (-)
vps18 vps18 coding upstream 269315 15653902 ~ 15659491 (-)
pigh pigh,LOC102778419 coding upstream 293283 15677870 ~ 15680252 (-)
wdr21 dcaf4 coding upstream 303931 15688518 ~ 15694621 (-)
LOC120546258 NA coding upstream 335842 15720429 ~ 15723341 (-)
G184452 LOC103369942,LOC106518591 non-coding downstream 58875 15283249 ~ 15288885 (-)
G184420 NA non-coding downstream 173641 15173711 ~ 15174119 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding downstream 174120 15169136 ~ 15173640 (-)
G184404 LOC103369948,LOC101169258 non-coding downstream 209045 15132217 ~ 15138715 (-)
G184406 LOC107378075,LOC100701982,LOC107704376,LOC101474541 non-coding downstream 209447 15135469 ~ 15138313 (-)
LOC120546341 NA non-coding upstream 311913 15696500 ~ 15700999 (-)
G184662 stx7 non-coding upstream 349831 15734418 ~ 15735282 (-)
G184668 ctgf non-coding upstream 388099 15772686 ~ 15775486 (-)
G184696 NA non-coding upstream 627913 16012500 ~ 16015535 (-)
G184699 LOC107390449 non-coding upstream 640631 16025218 ~ 16033730 (-)
rps29 NA other downstream 236281 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 680159 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 734814 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 849390 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 1856617 13473683 ~ 13491143 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 404239 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 681267 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 762003 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 1106063 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1441065 16825652 ~ 16835983 (-)

Expression


Co-expression Network