rnf8


Basic Information

Item Value
gene id rnf8
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23548578 ~ 23554266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782738.1
CGGTTTCGCCCTGTCAATCTTCAGTTTGACACCGTAGCAAAACGTTAGCCATGGAGGAGTAACATATGTTTTTCAGGTCGTATTAGCCTCTGACAGAATGAGATAAGATGGATACTGTAACGACAGATTCGTCTGCAGCTGAGGAAGATGACAGTTCAGACTCAGAGGTTTTATGTTTGATGAGAGTTGGAAGAAATTCAGACTGGCTTCGCTTGTTCGAAAACACTGAGATCACTATAGGACGTGGTGTGGATGTAACTCACCAGTTGTTGTCTCCAAGTTGTCCTCTGATGATCTCCAGACTGCACTGTACATTTAAGCAAAGGGAAGGTGGCAAGTGGACAGTGACCGACAAGAacAGTCTCAACGGTGTGTGGGTGAATGGAAACCGCATACCTGCTGAAGAAGCCCATCAGCTGAGGCTCGGAGACTCCATACAACTCGGTGTTCCTGTAATTGGAACCGAAGTGGAGTTTGACTACATGCTCGTCCAGCGGCCCCTCAAAGACATTAAACTTTACCTGGCAAAGGGACACAGAGAGGGTGCTAAAGCAGCCCATGTTGCCAAGAAGCCCAAAAGGAAGTTGACCGTGGAAGAAGTTGAGCCGTCTACCTCAAAGCCCAAGCTCTACCGCTGCTCCTCTGCAGACAAGTCATTTGCAAAGCCTTGCCCTCTGTCACCAGTGAAACGGCAGCAGAGGCTGAGTCACATCCAACCAGAGGAAACTGGACCCAGCAGACACGTCCAGGAAGTAGACCGGCCCTCAGATGGCTCCAGCAGTCCGTGTGACCTGGACAACTTGCAAATGTACAGCCAGAACATCCTGATGCTGAGGGAGCAGGTGGATGACACCCAGAGGCAGGTAGCCTCGCTGGGGGGAGAGCCCCGGCAGGCTGACCCGCTCAGAGAGGAGCATGTCAGGGAGCTGCGGGGTCAGCTTGAGACGCTCAGAGCCAAGATGCACCGGATGGAGACGTTAGAGAAGTCCTTTAGTGAAACTAAGAGGCAGCTAGAGGCACAGAAAACACAGCAACAAGAGGAgcttttgaagaaacagttggAAGAAGCCTTGCAAGAGCAAAAGAAGGTAATAGACGAACTTGCCCTTTCTCGGGAAGGCTTTGAAGAGATTCTCTTGGCCAAAAACAAAGAACTTGAAGTGACAAAGgaggagaaagaaaaggcGAGGGCCCAAAAAGAGGAAGTAGTAACACAAGTAACTGAAGTTCTGGAGAACGAGCTTCAGTGCATCATCTGCTCCGAGCTCTTCATTGAGGCAGTCATCTTGAACTGCGCTCACAGCTTCTGCAGTCACTGCATCAAGCAGTGGCGCAAAAAGAAAGACGAGTGTCCCATCTGCCGACGGGCCATCCAGTCCCAGACCCGCTGTCTGGCCCTGGACAACTGCATCGACAGCATGGTGGAAAACCTGAGCCTGGACATGAAGTCGAGGCGGCAGACCCTCATTACTGAAAGGAAAGcgGACTCTGCTCAGGTGATGGTGATCCACGATGACgacagcagcaggagcagcaggagcagcgatAGCGACGGCAGCATGGTGTCCATAGATAGTAGCCTGAGCTCTGTGGTCTCTCTGGACACAGACAGTAGCATCCACTTGGACTCCAGTCCGCCCTTCAGTTTCTCTGATGAAAGTGTTGATGAGTTTGATGATTAGCCCTTTTCTTCTGTGGGCTGTAACATGaatctggcttttttttttggt
>XM_039782739.1
CGGTTTCGCCCTGTCAATCTTCAGTTTGACACCGTAGCAAAACGTTAGCCATGGAGGAGTAACATATGTTTTTCAGGTCGTATTAGCCTCTGACAGAATGAGATAAGATGGATACTGTAACGACAGATTCGTCTGCAGCTGAGGAAGATGACAGTTCAGACTCAGAGGTTTTATGTTTGATGAGAGTTGGAAGAAATTCAGACTGGCTTCGCTTGTTCGAAAACACTGAGATCACTATAGGACGTGGTGTGGATGTAACTCACCAGTTGTTGTCTCCAAGTTGTCCTCTGATGATCTCCAGACTGCACTGTACATTTAAGCAAAGGGAAGGTGGCAAGTGGACAGTGACCGACAAGAacAGTCTCAACGGTGTGTGGGTGAATGGAAACCGCATACCTGCTGAAGAAGCCCATCAGCTGAGGCTCGGAGACTCCATACAACTCGGTGTTCCTGTAATTGGAACCGAAGTGGAGTTTGACTACATGCTCGTCCAGCGGCCCCTCAAAGACATTAAACTTTACCTGGCAAAGGGACACAGAGAGGGTGCTAAAGCAGCCCATGTTGCCAAGAAGCCCAAAAGGAAGTTGACCGTGGAAGAAGTTGAGCCGTCTACCTCAAAGCCCAAGCTCTACCGCTGCTCCTCTGCAGACAAGTCATTTGCAAAGCCTTGCCCTCTGTCACCAGTGAAACGGCAGCAGAGGCTGAGTCACATCCAACCAGAGGAAACTGGACCCAGCAGACACGTCCAGGAAGTAGACCGGCCCTCAGATGGCTCCAGCAGTCCGTGTGACCTGGACAACTTGCAAATGTACAGCCAGAACATCCTGATGCTGAGGGAGCAGGTGGATGACACCCAGAGGCAGGTAGCCTCGCTGGGGGGAGAGCCCCGGCAGGCTGACCCGCTCAGAGAGGAGCATGTCAGGGAGCTGCGGGGTCAGCTTGAGACGCTCAGAGCCAAGATGCACCGGATGGAGACGTTAGAGAAGTCCTTTAGTGAAACTAAGAGGCAGCTAGAGGCACAGAAAACACAGCAACAAGAGGAgcttttgaagaaacagttggAAGAAGCCTTGCAAGAGCAAAAGAAGGTAATAGACGAACTTGCCCTTTCTCGGGAAGGCTTTGAAGAGATTCTCTTGGCCAAAAACAAAGAACTTGAAGTGACAAAGgaggagaaagaaaaggcGAGGGCCCAAAAAGAGGAAGTAGTAACACAAGTAACTGAAGTTCTGGAGAACGAGCTTCAGTGCATCATCTGCTCCGAGCTCTTCATTGAGGCAGTCATCTTGAACTGCGCTCACAGCTTCTGCAGTCACTGCATCAAGCAGTGGCGCAAAAAGAAAGACGAGTGTCCCATCTGCCGACGGGCCATCCAGTCCCAGACCCGCTGTCTGGCCCTGGACAACTGCATCGACAGCATGGTGGAAAACCTGAGCCTGGACATGAAGTCGAGGCGGCAGACCCTCATTACTGAAAGGAAAGGTGAGAGcgGACTCTGCTCAGGTGATGGTGATCCACGATGACgacagcagcaggagcagcaggagcagcgatAGCGACGGCAGCATGGTGTCCATAGATAGTAGCCTGAGCTCTGTGGTCTCTCTGGACACAGACAGTAGCATCCACTTGGACTCCAGTCCGCCCTTCAGT

Function

NR:

description
E3 ubiquitin-protein ligase RNF8 isoform X1

GO: NA

KEGG:

id description
K10667 RNF8; E3 ubiquitin-protein ligase RNF8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782738.1 True 1730 mRNA 0.51 9 23548578 23554266
XM_039782739.1 False 1653 mRNA 0.52 9 23548578 23554182

Neighbor

gene id symbol gene type direction distance location
mia3 mia3 coding upstream 8734 23522887 ~ 23539844 (+)
hlx1 hlx,LOC102784911 coding upstream 153242 23391206 ~ 23395336 (+)
slc35f6 slc35f6 coding upstream 167364 23371884 ~ 23381214 (+)
kcnk3a kcnk3,LOC102784354 coding upstream 200222 23307723 ~ 23348356 (+)
LOC120546473 NA coding upstream 295129 23246999 ~ 23253449 (+)
slc35b2 slc35b2 coding downstream 35702 23589968 ~ 23597399 (+)
rbm25b rbm25,LOC108233444,LOC103353665,LOC102789801 coding downstream 56743 23611009 ~ 23624138 (+)
atp6v1d atp6v1d coding downstream 86609 23640875 ~ 23644644 (+)
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding downstream 475787 24030053 ~ 24068592 (+)
nt5c1bb LOC104946496,LOC101163217,LOC103359106 coding downstream 653060 24207326 ~ 24215960 (+)
LOC120546283 NA non-coding upstream 42014 23475699 ~ 23506564 (+)
G186841 NA non-coding upstream 109058 23438240 ~ 23439520 (+)
G186843 NA non-coding upstream 113227 23435136 ~ 23435351 (+)
G186842 NA non-coding upstream 116195 23420899 ~ 23432383 (+)
G186747 NA non-coding upstream 273118 23268798 ~ 23275460 (+)
G186882 hsp90ab1 non-coding downstream 48370 23602636 ~ 23607535 (+)
G186901 mpp5 non-coding downstream 93313 23647579 ~ 23649568 (+)
G186902 mpp5 non-coding downstream 96130 23650396 ~ 23658430 (+)
G186905 gphn,LOC106608213 non-coding downstream 112671 23666937 ~ 23668127 (+)
G186954 NA non-coding downstream 275259 23829525 ~ 23861934 (+)
rsph3 rsph3 other upstream 351582 23192638 ~ 23196996 (+)
ppp2r5a ppp2r5a other upstream 405938 23095912 ~ 23142640 (+)
dtl dtl other upstream 453073 23087820 ~ 23095505 (+)
si:ch211-22i13.2 NA other upstream 582568 22962033 ~ 22966010 (+)
kcns3b kcns3,LOC103372653 other upstream 738058 22807879 ~ 22810520 (+)
tcte1 NA other downstream 5232 23559498 ~ 23564429 (+)
nfkbie nfkbie other downstream 24112 23578378 ~ 23589689 (+)
G186975 NA other downstream 525337 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 590731 24144997 ~ 24146762 (+)
extl3 extl3 other downstream 601221 24155487 ~ 24187864 (+)

Expression


Co-expression Network