cipcb (cipc,LOC101061969)


Basic Information

Item Value
gene id cipcb
gene name cipc,LOC101061969
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14561407 ~ 14566531 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782750.1
tttgatcaCACTGTACTTTTATCTTTGAGGTTTTTAATCAAATGTATTCTTTCTTCTTCATATATGGAAGACTTTGGTCAATCaaaggtcatttcagagagagatagtgttcctattggctgttggGCCAATGATTTGCCCTGAcaaagaggggagagggagagctgcaggaagagaGCTCACTATACTttaaattattgtattttttgcatactacccactgcagctttaatgcagagcttgttgtgtttatttacatAAGTAGACAACTCCATATTTTCTCATTGCTGCTGTAGTTGCTGTGAGAGCTTGTCGAGCCAAGGACATTGTCAGAACAGCAGGAAAGGAGATGAGCACCAAGAGGAAGGCCGCGAGTCACTCAAGGGCAGCAAACAGACCACGCATCATGAAGTCTAGCGTCTCCAAGGCTGATTCAGAGAGAGACTCCGGCTTCTCAGATGCATGCTCGGAGCACATGAGCACAATGGACAACACCGACTCTGAGGATTCACCCCGTCATGTTGTACAGCAGGGAGCGCAGGCTTCTGGATCGGGGCCCCAATCCTCCCAGCTGGCTGTGGTGGGAGGCTCCTACTCGAGTCTTTCTCCCATGATCATCATGAACAACGTCCTCCTCAAGCAGCCTACAGATAATCCTCCTGCTCTAAAGACCTGGGGGTTTAGTCCCACGGTGGAGGTGGTCCAACCTGTGGTCCAGCAGCCTCAGGTGGTCTTCCTTCAGCCTGTGGTCTCTCGTCAAGCCTCCCCTGCCTCCAAAGAGGCCTCCTCTAGACACAGACGCACTAAGAAGTATCTTCCAATCCTGAAATCCTACCCCAAGATTGCTCCACATCCTGGAGACAGCTCCAGTTCCTCAGGGAGAGGAACGGCCTCCTCATCTTCTTCCTCCAGcatctcctcttcttcttctttttcttcttcttcttcttactcttcctcttcttcgGGGTCAAAGAGAGGTAGCAGTTTGACCTCCAACCACCGGGAACGCTGTCAGCAAGAGAAGCAGAAGAGAAAGCTGTGTGGTGGTGCTAGGAACTCTGGTTCAACCACTCTCAGTCTTCCTGCCTCCCCCAGCGCCACGTCTCCTCTGCTCCAGAGCCGACTCTCTCTTCCCACAACAGAAACCAGTGCCAGCAGCAGTCCTGCCAGGGAGAGGCCTTCATCAGCTGTCAGCCAGGCAGAGTTTTCCACCTCTCTGTCTGTTATTCACACCACTGGCCCTCCTGCACTGACGGTCACCCAGGAGAACAGCTCATCAGGAGAATGTAACCACGGTGAGAGTGATGCTGATACAAAGCGGAAGCGCTTCTGCAACACTTACAACATCCTTAGCCAATCTGGCCTGCTGCACATTGCACTCTGCACCAAGGAGCTCCTCAGGCAGAACCGGCGCACTCAGAGCGACCTAGACCGCCTAAAAGAACACACAGACCTCTTCCTCCAGGCTCTGTGCAGTGGTGACACCAGCATCTGCATTAGGCTGCAGGCCAGCCTTcaggaggaagacagagagagcgagagagagagctgctCAGACCTTCTAAAGGCAGATTAGACCTAGACTAGTGCTAGGCAGTAATCCTTTAGACTGAGCTGGGGAAAGGAAGGCCAGGGCTCCACaatacacccccacccccagaaTCTGTGCTGTGGCCTACATTTTGGCTGCCTCagggccctgacacaccaaacCGACCTCAGAGAATTAGTGCCGATAAAGACGTTTTTGTTGCCTCATGTCTTCTAAAAGTAGCACATTGGAACTCATCGTAAGGCTGTAGCTGGTGGCCAGTTGTCCGCCAACGTGCACACATATGTTCTGCACCTGTGTGAGAGGTAAGATTTTAGTCAGCAGTCAGTATTTTGTAATCTAGGAAACCTCGTGGAAAGAGAAGCAAAGCAAACTACACTACCATTTCTTTGCCACAGCATTTGTGAAAATAACTCAGCATTCCTAATGCTCAGATTGTGAATTGGGGTTATCTGCCAGTGGTCTTCATCTtgtggaaaaataaaaacttgagGTGAAAAACCGGATGAAACTACACTAAATCATTGAAATCATAGATTTGGTCACTCAGCCCTCCTCTCTAATTGCCTCCGTCACTGATTCAACAAGCTTAATCATCCATCCAAACAGCCTAGTGCTACACTAGTGCCATTAGTGAAGGACACACTGCAAAAACTGCGTGCGGTGGTCGTTCACACACTTTTAAGTGCTGCACAGTCACCAGCTGTGGCTTGGTGTGTTAGGGGCCCACAGTCTAACGGAAGGCCAGagccacagctccctgttctgCCATACTGAGCCTGACTAGATCTATTCCACTGGAACTGCCTCTCTGTGCACAGAAATCTTTAACTCATTGGCAATCAAGACCCTGAAAGATTTGAATCCAAGGCATGAATCGGTGAACATATACAAaacttttttaaactgaaagcaCAACACAGGCTCGGAATCAGAAAACTTGATTTCAACCCAAAGACTGGATATTTAAACTTTTAACAGTGCATGACGAGGTGTACTCATCTAAAACTGAAAGACATCAGCATACTGCtcattgcttttatttaattaggTTTCAACAGTTTTGCATCATTCATGGTAGTCCTCTAAGCTGTGTCATTGATACTGATGTGTAGCTTAACAGACATCCAGTTTGTCTAAATTATTTCATGCAGCTGTTACAATAATGTAAAATTGATGATTATAACTGGCTTATGTCACATATATAGAATGTGTCCAGGGCCTTTTGCCAGTCAGCATTTTGTAAATAGACAAACATGTgcctaaagttttttttttttttttttttttttttagttcctGCTTCATTTTTAAACATGATGTGAAAGATTTGGCACACCGCGTTGACTGTTTTAAGTTCAGCTTTCCTTTCATGTTGGCGGAAGATGTAATACAGTGCAAACTAGCTGGAAGTAAAGCTCTGAACAGCCATTTTGGTATGTTCCCAAAAACAGCCCAGTGTAACGGCTGCTTCCTATAGTTCAACCATATTCGTTAGTTACTTGTGTACGAGTTccatcatttgtttttgtgtgtttttctatgTACTCGTGGATGTAATTTAATGTGGAAATATTGTCTTAACTTAAGTgcagactttttctgttttaagtTCCTGTCATTATGTAACTATTGCATCGTCCAAATTAGGAACAGTTGTGGAGTTTTGTGATGCttaatataaactttttgtataCTTATAAGTTATGGCCTTAATATCCATCCCAATGTATGTCACAGAACTTTGCATTTGCACTAAAATAATCTGAGAGCAGCTCTGAAGTATTTTCTGGGCAGAATCTAACGGCAGCTATGGTAGCTCCTTTGAGGCAGACTGCATGTCTTTTTAATTGACTTGAATTGCATTGTGAGGCATCATAAGCCACTACCAGTGTATGAGTACTATTCCTAAAGGACAACCCTACATTTACATGGTTCCATATCTCAGCTTTTATTTGGAAGGACAGAAGCACACTGATTAACTTTTAAGCTTTTGCTTTGTAAATGGACTGATATGTCAACGTTTATGCCTTCATCAGAAAGAATCCGTGGACATTTTGACAGAAGAGGACACAGTAGCAGATGATACGATGTTTCAACAATATCCACTGTAAATTaatcattattaattattaatagtCTCCCAAACCAGATTTAATGTATGTTTAGGGTCACTGTCCTACTGGAAAACAATGCTGTCTAACACTCTGCCCTCTGGCTCATAGTTTGATGTTGCACTGAAGAAATTTGAGGTCATCTTACTCTGCAGTGCACCAGTTCCACTGGCCGCCCCAGATACACTGTACAATCTTTTTGTGGTTGACTGGCTCAGTATCTCCCCTCTAAACACTACTATGGTTATTGTGGGAGCTGACCACAAAACCTTCCAAATGTCTTAAAAAACTCCATCTTGGAACATTTTAGTTTTCCTGACCTGTTCCAAGTATTTTGTGTCTTCCcactaaaatgaatgtggtTCAAGCTAATAAGAGCAGCCAAACTGGCTCTTTTTGCACAGACACAGTTAAGTTTCTAGCAACAAGATGTTGACATTTTAGACTTTTCTACatttaccaataaaaaaaaaagctcaatgTATGAGTTTTTAATCCAGCAGATCTTCCAGAAGACCCACAAATCATTTATGAAGTAACCTAAATGGTTTATCTGCTACAGTAATGATGTATGTTTCCCAAATGTGATAAATAAGTTGTAGAAACAACTGAGAAAGGGTTTGATGTAACATGTTTTGGGtttatttttgtacatttttagtttgAGGCTCATTGCTGGTGTAATAAATGTTATTCCAAAGAAA

Function

symbol description
cipc Predicted to be involved in negative regulation of circadian rhythm and negative regulation of transcription, DNA-templated. Located in cytosol; nucleolus; and nucleoplasm.

NR:

description
CLOCK-interacting pacemaker-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782750.1 True 4373 mRNA 0.44 3 14561407 14566531

Neighbor

gene id symbol gene type direction distance location
znf410 znf410,LOC102793462 coding downstream 947 14548038 ~ 14560460 (-)
LOC120547074 samd15,LOC102792272,LOC106518567 coding downstream 32054 14525235 ~ 14529353 (-)
lrfn5b LOC104919828,LOC103359906,LOC102792771 coding downstream 37236 14509448 ~ 14524171 (-)
LOC120546407 NA coding downstream 172964 14387520 ~ 14388443 (-)
LOC120546406 NA coding downstream 180230 14380014 ~ 14381177 (-)
actr10 actr10 coding upstream 17499 14584030 ~ 14592235 (-)
arf6a arf6.2,arf6,arf6a,LOC106518576,LOC104956700,LOC101063995,LOC106608083,LOC105893149 coding upstream 111009 14677540 ~ 14680093 (-)
fkbp3 fkbp3 coding upstream 136936 14703467 ~ 14706436 (-)
LOC120546409 mdga2 coding upstream 225582 14792113 ~ 14929662 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding upstream 555298 15121829 ~ 15128493 (-)
G184306 NA non-coding downstream 67839 14491099 ~ 14493568 (-)
G184295 NA non-coding downstream 122452 14432231 ~ 14438955 (-)
G184293 NA non-coding downstream 129235 14427804 ~ 14432172 (-)
G184292 NA non-coding downstream 136560 14423153 ~ 14424847 (-)
G184291 LOC103359912,LOC104959468 non-coding downstream 144159 14416872 ~ 14417248 (-)
G184346 NA non-coding upstream 89126 14655657 ~ 14656247 (-)
G184356 NA non-coding upstream 105363 14671894 ~ 14677060 (-)
G184360 NA non-coding upstream 122775 14689306 ~ 14689940 (-)
G184354 NA non-coding upstream 133153 14699684 ~ 14702181 (-)
G184381 NA non-coding upstream 474778 15041309 ~ 15041536 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 63037 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 1070264 13473683 ~ 13491143 (-)
fkbp1b fkbp1b other downstream 1093342 13458602 ~ 13468065 (-)
runx2b runx2,LOC102312376 other downstream 1257623 13255885 ~ 13303784 (-)
hmgn3 hmgn3,LOC104958971 other downstream 1345507 13145464 ~ 13215900 (-)
naa30 naa30,LOC102795089,LOC104960600 other upstream 4849 14571380 ~ 14612946 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other upstream 90646 14657177 ~ 14667601 (-)
rps29 NA other upstream 543709 15110240 ~ 15111479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 1222295 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 1499323 16065854 ~ 16068309 (-)

Expression


Co-expression Network