lft1 (LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013)


Basic Information

Item Value
gene id lft1
gene name LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10226816 ~ 10229005 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782751.1
aTGGATTTCCTGCGCGCTTGTGTCCTTTGCACCGCTCTCTTCGGTCTCGCCGAGGCTTTTACGCACCAGGATATGAAGGACGCGCTGCTGCAGAAACTTGGCTTGGATGAAGTTCCTAAGATCCATAAAAGGGATTTGGAGAATCTGGTTATCCCGGCGCATATCAGAAATAAGTACATGTCCATGTTGAAGATGCACCACAGCAGGAGACGCAGATCTCTGCCCAGCCTGGCCGGCATCCTGAGGGGAATCCCTGGCAATGCAGATATTTCCGGGGAGTATGTGTATTCTGACGCCACTCGGCATCGCATGGTGTTCGACATGGAGGCCAGGGTTCCGGAAAACAGCGAGGTGACCATGGCGGAGCTGAAGCTCTACCAGCGGGCTTCCTATCACAAGCGCTTCGCGGTGGAGAGGAAGAGCCACCGGCCCGTCAACAACGCCCGGGTCAGCATCTACTGGGTGGAGGTGCTGCCCAACGGATCCAACCGCACATCACTGGTAGACTCACGGTTGATCCCCATTCACGAGACCGGCTGGAAGAGCTTTGATGTGACCCAGGCGGTGCACTATTGGTCCAAGAGCGAGCAGAAGACACCTATGCACCTGGAGGTGTGGATAGAGGGCGACAGACCTGGCAGCTACGCGGCCGAGATGGCCAAGGGTGTCCGCTTTACCACCCAGGAGCAGACGGACAACACCTTGGGGAAGCCCGAGCTCATCCTCTACACACTCAACCTCGAAGAATACGGTTCTCGCGGCGACTGCAATCTCAACCAGAACAAAGACGCCTGCTGCAGGGAAGAGTACTTCATCAACTTCCGCGCTCTCACCTGGACGCAGTACTGGATCATCGAGCCGGCAGGGTACCAGGCGTTCAGGTGCACCGGCGGCTGCAAGCAGCCCAAGCGCAACCACGGCTACGGGGAGCGGCGGTGCACGGTGTCGGAGAGCGCCCCGTTACCCATCATGTACCTGGTGAAGAAGGGGGACTATACTGAGATAGAAGTGGCCGAATTCCCCAATATGATTGTGGAGAGGTGTGCCTGCACCATGGACAACGTCTCCATAGTATGA

Function

NR:

description
PREDICTED: left-right determination factor 2

GO:

id name namespace
GO:0016049 cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04668 LEFTY; left-right determination factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782751.1 True 1077 mRNA 0.57 4 10226816 10229005

Neighbor

gene id symbol gene type direction distance location
kif26bb NA coding downstream 18491 10178309 ~ 10208325 (-)
cnstb LOC103373900 coding downstream 52838 10148075 ~ 10173978 (-)
LOC120547244 NA coding downstream 89040 10136000 ~ 10137776 (-)
LOC120547068 NA coding downstream 281075 9944865 ~ 9945741 (-)
LOC120546991 NA coding downstream 371432 9853740 ~ 9855384 (-)
fzd3a fzd3 coding upstream 117995 10347000 ~ 10379127 (-)
fam49a fam49a coding upstream 169797 10398802 ~ 10449410 (-)
sf3b6 sf3b6,pm14,SF3B6 coding upstream 433112 10662117 ~ 10666300 (-)
pla2g7 pla2g7,LOC102800283 coding upstream 464834 10693839 ~ 10708837 (-)
glrx5 glrx5 coding upstream 495465 10724470 ~ 10728525 (-)
G183492 hnrnpu non-coding downstream 9690 10216351 ~ 10217126 (-)
G183457 NA non-coding downstream 49247 10176900 ~ 10177569 (-)
G183458 NA non-coding downstream 51461 10174736 ~ 10175355 (-)
LOC120547073 NA non-coding downstream 160530 10064593 ~ 10066286 (-)
G183383 NA non-coding downstream 178584 10047957 ~ 10048232 (-)
G183530 NA non-coding upstream 328482 10557487 ~ 10558119 (-)
G183531 NA non-coding upstream 336911 10565916 ~ 10566164 (-)
G183534 NA non-coding upstream 362075 10591080 ~ 10591338 (-)
G183594 NA non-coding upstream 525991 10754996 ~ 10780282 (-)
G183616 NA non-coding upstream 718811 10947816 ~ 10948114 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 125755 10099478 ~ 10101061 (-)
G183176 NA other downstream 1093344 9129573 ~ 9133472 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other downstream 1202251 9020960 ~ 9024565 (-)
LOC120546397 NA other downstream 1439598 8781328 ~ 8787218 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 2100152 8049458 ~ 8126664 (-)
LOC120546776 NA other upstream 226239 10455244 ~ 10610625 (-)
G183528 NA other upstream 291712 10520717 ~ 10521410 (-)
G183650 NA other upstream 1145103 11374108 ~ 11374615 (-)
ost4 NA other upstream 2678297 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 2731493 12960498 ~ 13007868 (-)

Expression


Co-expression Network