rps12 (rps12)


Basic Information

Item Value
gene id rps12
gene name rps12
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17760870 ~ 17763808 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782772.1
CTGTATGGCACAGATGGGTCCTGGTGCTATGAAAGCAATGTCGCAAGTTTATGACGTCCTCTTTTACCGCTACCCGAGAGTAGGATAGGAACTTTTAAGCCTACCATCCATCTTTAATCAACAATGGCCGAGGAAGGCGTCGCTGCTGGAGGTGTGATGGATGTCAACACTGCTCTCCCTGAAGTGCTTAAGACCGCTCTCATCCACGATGGCCTCGCCCGTGGTATCCGTGAGGCTGCTAAGGCCCTGGACAaGCGTCAAGCCCATCTCTGCGCCCTTGCAGGCAACTGTGATGAGCCCACCTACGTCAAGCTGGTGGAGGCCCTCTGTGCTGAGCATCAGATCAACCTGATAAAGGTTGATGACAACAAGAAGCTCGGCGAGTGGGTCGGTCTGTGCAAGATCGACCGTGAGGGCAAACCCCGCAAGGTTGTGGGCTGCAGCTGTGTCGTTGTCAAGGACTATGGCAAGGAGTCTCAGGCAAAGGATGTGATCGAGGAATACTTCAAAAGcaagaaataaaatgtcaataaaaagtgGAAATGGA

Function

symbol description
rps12 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12).

NR:

description
PREDICTED: 40S ribosomal protein S12

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02951 RP-S12e, RPS12; small subunit ribosomal protein S12e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782772.1 True 547 mRNA 0.52 6 17760870 17763808

Neighbor

gene id symbol gene type direction distance location
LOC120547287 NA coding downstream 59463 17697438 ~ 17701407 (-)
LOC120546939 NA coding downstream 102994 17656654 ~ 17657876 (-)
myb myb coding downstream 285974 17465918 ~ 17474896 (-)
armc1l LOC103368599,LOC104950028,LOC108242485 coding downstream 382242 17375197 ~ 17378628 (-)
iyd iyd coding downstream 450423 17307112 ~ 17310447 (-)
LOC120547258 NA coding upstream 3351 17767159 ~ 17779910 (-)
sh3bgrl2 sh3bgrl2 coding upstream 19931 17783739 ~ 17790479 (-)
ccm2 ccm2 coding upstream 50667 17814475 ~ 17824517 (-)
xkr6b xkr6,LOC104922444,LOC102798941,LOC102196726,LOC102289544 coding upstream 61831 17825639 ~ 17879853 (-)
si:dkey-71h2.2 LOC102796288,LOC101475494,LOC104959816,LOC106959609,LOC103138648 coding upstream 298912 18062720 ~ 18101094 (-)
G185200 NA non-coding downstream 69428 17687876 ~ 17691442 (-)
G185125 sgk1 non-coding downstream 164873 17593366 ~ 17595997 (-)
G185124 NA non-coding downstream 174378 17586251 ~ 17586492 (-)
G185123 sgk1 non-coding downstream 182582 17565669 ~ 17578288 (-)
G185094 NA non-coding downstream 233505 17525518 ~ 17527365 (-)
G185236 NA non-coding upstream 152333 17916141 ~ 17916528 (-)
G185294 NA non-coding upstream 293612 18057420 ~ 18058172 (-)
G185295 NA non-coding upstream 296581 18060389 ~ 18061348 (-)
G185320 znf513,LOC102795572 non-coding upstream 373917 18137725 ~ 18140207 (-)
LOC120546287 NA non-coding upstream 420152 18183960 ~ 18186587 (-)
tbpl1 tbpl1 other downstream 129519 17623124 ~ 17631351 (-)
LOC120547341 NA other downstream 491236 17266359 ~ 17269634 (-)
gpatch2 gpatch2,LOC102785715 other downstream 924887 16825652 ~ 16835983 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other downstream 1242996 16490650 ~ 16517874 (-)
LOC120546332 akap7 other downstream 1572540 16146590 ~ 16188330 (-)
zgc:153284 NA other upstream 997 17764805 ~ 17766910 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other upstream 147462 17911270 ~ 17913036 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 726007 18489815 ~ 18506198 (-)
LOC120546357 LOC106525279 other upstream 876613 18640421 ~ 18647401 (-)
abcd4 abcd4 other upstream 1014322 18778130 ~ 18790373 (-)

Expression


Co-expression Network