LOC120547269 (soga3,LOC102312356,LOC102202636,LOC101478077)


Basic Information

Item Value
gene id LOC120547269
gene name soga3,LOC102312356,LOC102202636,LOC101478077
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16409299 ~ 16415197 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782796.1
CCCTGTGTCAGCGACTCTCCTTAATGCTCTGCGGTAAGAATTCACCCATTATGTGGAGCTCTGTGTAAAAATGCATTCAcagtttagattttatttttttaaatatgtcggTCAGTGGCTGTCGGTCCAGCAGGATAGAGTCCATATTTAATGGTCCCGGACAAAACAAGTAGGCCTACACATCCCTCGTAAAGTTATGGGTCAGGGTGATGAGGGTGTAAAGCCATAGTGTAAAGCAGTCGCAAAAAAGCGCCATCTTGTGGCTTGCCTACTGGAAGTTAAAAACTCTTAAAACCGAGCTAAACATAGGCTATGTAAATAAACAAGTGTGGAATTTCTATACagcttttttcattttcactcgTGATGAACAGCAAGAAATTACAGTCTACGTTTGGAGTTTATTTAGGCCCAAGTgaagcaaaaataaaatgaagccTGCCGCCAGCGGCGCTGCAGATCCTCCATCATCGTCAACATCATCAGCAGACAATAGcgcagggaggaggaggcagcaCCGGGCTCCCTCGCCGGCTACAGCCCAGGAAGGGGCAAACAGACGAGCTTCACGGCGCCCAGGCAGGTCCAGATCTCCTCTACCCGCGGGAAGGAGCAGAATCATcggggtgagagagagattgaggtCCGCAGACGGAAGGGAGAGGGAGCCCGAGAGCCGCGGAGGGGCAGCTGTTCATCCGGATGGTGCTGAAGCTGATCTAGTCGCACCAAACAGGGCGGATGCTGTCGGGAAAGGTCCGACAGAATCATCAGCATCGGCCCGTCGCTCCGCTTTACGCCTGCCCTGCCTCAAGGGCGACTCCTCCGAGCGTTTGTTGCCCGGCAGAGCATCGCCTTCCTTCTCCGTGGCAGAGAAAGGGAAGATACCCGGAGAGGAAGGCCGTCGTAGGGAGAGAAGCGGCGCGTCTGAGGGCTGCGGCTCGGGCCTCGGTTTGGGTTTGTGGAGAGGAGGATGCTTACATGCTGAACTCATCCAGTTCCATCTGCAGAAGAGATTGAGAAGAAGCAGTGCGAAGATGCAAACCAAGACGGATAACATGGGAACAGAGGAGGCCGCTCTGGGAGAGCCGGAGCCGGCTGCAGAGGCAACAGAGGCGGGGTCCGTGACACAGCAGGACCAGGCCTTTGAAGACGAGATGGAAAGACTGCTTGATGAAAATGAAGATCTTAAGTGTGAAATTGAGGAGATGAGGACCGAGATGGACGAGATGCGGGACACGTTCTACGAAGAAGACACGTGTCAGCTGCAGGAGATGAGGCGTGAGCTGGAGAGAGCCAATAAAAACTGCCGGATCCTGCAGTATCGTCTGAGGAAGGCTGAGAGGAAGAAGATGCGCTACGCCCAGACGGGAGAGATCGATGAGGAGCTGCTCAGGAGTCTGGAGCAGGACCTGAAGGTAGCGAAGGATGTGTCTGTGAGGCTGCACCACGAGCTGGAAAAGGTGGAGGAGAAGCgcacaaagacagaggaggagaatgaAAAACTGAGACAGAAACTCATAGAGGTGGAAGTGACCAAACAAGCCCTGCAGAATGAActagacaaaaacaaagagTCTCAAAAGAGAAGAGGAAGCAAGGACATCCAGAAGACAGACAGGAAATCAGCACAGACTCCTACAGAGGAGGACAATGAGGACCTTAAGTGCCAGCTAGCGTTCATCAAAGAGGAAGCGGTGCTTATGAGAAAGAAGACGGCCAAAATTGACAAAGAGAAGGACCGTCTAGACCAAGAGCTGCAGAAGTACCGCTCCTTCTATGGTGAACTGGACAGCACCCATCCTAAAGGAGAAGCTGGGGGTCCGCCCACCACCCGCGAGTCAGAGCTAAAGCTCCGGCTCCgcctggtggaggaggaggccaACATCCTGGGGAGGAAAATAGTTGAGTTGGAGGTTGAGAACCGTGGCCTGAGGGCCGAGCTCGACGACCTCCGCGGTGAAGGAGAGGGTGCTGGAGGCTCTGGGTGCGGAGCGATGGGTGGGCAGGGCTCGGGGCGGGGCCGCGGTGATGATCTGACGGAGCTCCGACAGCAGCTGCAGCTGGTGGAGGACGAGGCAGAGCTGCTGAGGAGGAATCTAGCAGATGCTGAAGATCAAAACAAGAGAGTGACTGCTGAGCTAAACAAGATGCGGTTCAAAGCCAGCACCCATGAGGGAGGCGCCAGGCAcgggggaggaggtggagggatTGATGGAGCAAAGGCAGAAGCCCTGCAGGAGGAGTTAAAGGCAGCAAGGCTACAGATTAATGACCTTAGTGGCAAGgTGATGCAGCTGCAGTACGAGAATCGTGTGCTCCTCTCCAACATGCAGCGCTATGACCTGGCCTCCCACCTCTCCCTGCGGCCCAGCCCACGGGACAGCGATGCAGAGAGCGATGCAGGCGGTGCGACAAGTGGTCGCCGTGAGAGTGACGAGGACTCCACCTCTTCCCGCCTCCTCCCACCGCACCGCAAACGAGAGGGCCCTGTAGGTGGGGAAAGTGACTCAGATGAGGTCAGAAACAATAACGGAAGCAGCCGTTGCCTGACGCCCACGCGGGGCCTCTACACCCCCACTGGGCCCGAGGGTGCCGCCTCCTCCGCCTTGGCCCGCTTTCTGCCTGGGGGCCGGTGCACCCTGCGCGAAAGGCAGCAAATGACTGACATCCGCACGGAGGCGGAGAGGCTCGTTCGCACCATGGACCGGCTCATCGCTGACACGGCCACTATCATCACAGAGGCTAGGGTCTACGTCTCAAACAGTGACCTGATGTTcgggaggggagaggagggtgGGGAGGAAGATGGGAGCAGGATCAGGGAACATGAGCTGCTGTATCGCATTAACGCTCAGATGAAGGCCTTCCGAAAAGAACTGCAGACCTTCATAGACAAACTGGAAGTGCCGAGGCATGAGGACAGGGAGACGGAGGAGCCACTGTCGATGTTCCAGCCTATCATTTTGCTCATCCTCATACTTGTGttattctcctccctctcttacgCCACCATCTTTAAACTAGTCTTTCTTTTTACTCTTTTCTTTGTTCTGTGATGTTCGCCTCCCTTAATTCACATCAtccctt

Function

symbol description
soga3 Predicted to be involved in regulation of autophagy. Predicted to be located in extracellular space. Predicted to be integral component of membrane.

NR:

description
PREDICTED: protein SOGA3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782796.1 True 3090 mRNA 0.55 8 16409299 16415197

Neighbor

gene id symbol gene type direction distance location
LOC120547270 LOC104949332 coding downstream 8 16401262 ~ 16409291 (-)
hddc2 hddc2 coding downstream 30130 16375886 ~ 16379169 (-)
LOC120547182 trdn,LOC103371166 coding downstream 177398 16208259 ~ 16231901 (-)
LOC120547308 NA coding downstream 214193 16189000 ~ 16195106 (-)
il20ra NA coding downstream 300727 16102053 ~ 16108572 (-)
elovl4b elovl4 coding upstream 3353 16418550 ~ 16426881 (-)
LOC120546560 NA coding upstream 68099 16483296 ~ 16486939 (-)
ngs NA coding upstream 108506 16523703 ~ 16527573 (-)
pou3f2a LOC100689997,LOC102789413,LOC101473289,LOC102290139,LOC103363798 coding upstream 143600 16558797 ~ 16561011 (-)
mrps18a mrps18a,LOC102788828 coding upstream 194667 16609864 ~ 16613070 (-)
G184755 NA non-coding downstream 26820 16379445 ~ 16382479 (-)
G184731 NA non-coding downstream 52732 16291390 ~ 16356567 (-)
G184730 NA non-coding downstream 157430 16250197 ~ 16251869 (-)
LOC120546331 NA non-coding downstream 264130 16125385 ~ 16145169 (-)
G184707 NA non-coding downstream 308567 16100144 ~ 16100732 (-)
G184762 NA non-coding upstream 18904 16434101 ~ 16434513 (-)
G184801 NA non-coding upstream 35557 16450754 ~ 16535319 (-)
G184813 NA non-coding upstream 107537 16522734 ~ 16523699 (-)
LOC120546751 NA non-coding upstream 181574 16596771 ~ 16605917 (-)
G184869 NA non-coding upstream 258391 16673588 ~ 16675507 (-)
LOC120546332 akap7 other downstream 220969 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 340990 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 613661 15788826 ~ 15795638 (-)
rps29 NA other downstream 1297820 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1741698 14657177 ~ 14667601 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 75453 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 410455 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 851162 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 1207927 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 1349608 17764805 ~ 17766910 (-)

Expression


Co-expression Network