esr2a (LOC103368808)


Basic Information

Item Value
gene id esr2a
gene name LOC103368808
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26139409 ~ 26159436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782810.1
TTGCCTCCGGGCTGTTATATGAACGCAATCTGACTTTCGGGGAACTTACTCTGTGTTTGGCCTTCCTGCAGCTCATAACAGCTCCCCAAACTATTGATTTCACACTTTACCAGCGTTTGACACCGCAGCGGGACTTCATATTGTCAGACTGTGACTGCGCTTGTTGTTTGTGGAAGAAGGGGTGGAAAGGCCCGGCACACGTCTTACTCAACGTGTTACCACTTAATGATGTGACACTCATGGCTGGATTGAGACTGATCACTGAACATCTTCCCTGCTGTGTTCACTATCCTCTGGATCATTTCACATCTCCGACTCTATGTGCTCACAGTGAGCACAGTATAAATCACAGTCAGCAACAGGTTGGATTGGAGTCATCCATCACCCTGGGAATTTGCAATGTGAGCTCATGAGTAACATTAAACCACCCTCGGCCTGTGTAGGTAGTTGTGCTGgcctttgcttttctttttcagggCCAGTACTCGTAGATAATGACATTACCTCAGTAAGCTCGACACCAGGAGAGAACTCTACCCTATATTCTTTATCGATGATGTGGTAAATCTTACGATACTGAGACCGTCTGTAGTTGCGATGGCTGCTGCTTCCTCTTTAGAGAAGAATCAGCCCCTCGTCCAGCTCCAGGAGGTGGACTCCAGTCGAGTTGGCAGTCGCGTCCTCGCTCCGGTCCTCAGCTCCTCCTCTCCTGGCCTGTCCCTGGAAACCAGCCAACCCATCTGCATCGCTTCCCCTTACACCGAATTTGGCCACGACTTCACCACTGTACCTTTCTACAGTCCAGCTATCTTCAGTTATGCCGGTCCGGGCATTCCAGATGGCTCCTCTGTCCATCAGTCACTAAGCCCCTCCATATTCTGGCCCAGCCACGGCCACGTGGGGCCACCCATACCCCTGCACCACTCCCCGGCTCAGACTCAGCACGGGCAGCCAATCCAGAGTCCATGGGTGGAGCTGTCGCCGCGAGACACTGTCTTTACAACTAGTAAGAGTGTGAAGAGGCGTTCTCAGGAGAGCGAGGAGGCGGTGGTGTCGTCCGGCGGCAAGGTGGACCTCCACTACTGTGCGGTGTGTAACGACCACGCCTCGGGCTACCACTACGGCGTCTGGTCGTGTGAGGGGTGTAAGGCCTTCTTCAAGAGGAGCATCCAAgGACACAATGACTACATCTGCCCCGCAACCAATCAATGCACTATAGACAAGAATCGCCGTAAGAGCTGCCAGGCGTGCCGCCTTCGCAAATGCTGCGAAGTTGGTATGACCAAGTGTGGTATGCGGAAGGAGCGTGGAAACTACAGGAACCCCCAGACGAGGCGAGTGACCCGTCTGTCCTCACAGGGCAGAACCAACAGACCGAAGGTGTTAAGCGGACCAGCGGTGGGTTTGTTACCCGCACCCCCCCCTCCTGCACTGACCCCAGAGCAGCTGATTGGGCAGATAATGGAGGCGGAGCCGCCGGAGATCTACCTCATGAAGGACATGATGAGGCCGCTGACTGAAGCCAACGTCATGATGTCGCTCACCAACCTGGCTGATAGGGAGCTGGTTCACATGATCAGCTGGGCCAAGAAGATTCCAGGGTTTGTAGAGCTCAGCCTCTTGGACCAGGTGCACCTGCTGGAGTGCTGCTGGCTGGAGGTGCTGATGATCGGACTGATGTGGAGGTCAGTGGACCATCCAGGGAAACTTATCTTCTCCCCTGACCTCGGCCTGAGCAGAGAAGAGGGGAACTGTGTCCAGGGCTTCTCGGAGATCTTTGATATGCTGTTGGCTGCTACGTCCAGGGTGAGAGAACTCAAGCTCCAGAAGGAGGAGTATATCTGCCTCAAGGCCATGATCCTCCTTAACtccaACATGTGCCTCAGCGTGACCGAGGGCAGCGAGGAGCTGCAGAGTCGCTCCAAGCTCCTACGACTTCTGGACGCTGTGACGGACGCTCTGGTGTGGGCCATCGCCAAAACCGGCCTCACCTTTCGCCAACAGTACACCCGCCTCGCCCACCTGCTCATGCTGCTCTCGCACATCCGCCATGCCAGTAACAAAGGCATGGACCACCTCCACTGCATGAAAATGAAGAACGTGGTGCCTTTGTATGACCTGTTGCTGGAGATGTTGGATGCCCACATCATGCACAGCTCCCGTCTGCCTCGCCAGCCTCTGCAGCAGGAGTCTGGGGACCAGACGGGGATTCCTGCTCGGCCACACAGCTCTCATAGCGGCCCCTCAAACACCTGGACTCCCTAGCAGCACTCTGGAGGTGAACCACAGCAGTCGAATGCAATGAATTGTCACCGCTTCGCACAAACTAGTTCTGACGAGACGTTTTACTGGAACATTCTGCTGATAGGTAGCTCAAGCTTTGACACACTGCGCACTTATTCTAGTGAACTTTTGAATGTTAAGACATcactctgcagacggaccgaaCTCGCAGTATTCTGTGCCTTATCATCCCCAcatattgataaaaaaaaaaaaaactgttgtcaTAATTTGGCCAGTAGCACCAGTTCTTGCTGTCGTTCATGTAATATGACACTGCCATGATTCTCTTGGGTTGAGCAGCTAATTTCATATCAgatcatattcatatattttcaTTGTTCATGTCTGGTATTTTTCTGGACACAGAGATGGTGTGTGTAAATAACCAAACCAGCAAAAAATACCCCCCATGTTGCAGCCTAGATTTGGGTATTATGATGATATATACATAGACAATATGATTATTTGTTATACTGCTTCTGTTGAGGTAGCTATTTATTTAATATCTCTGGGTATGTAGGTATATTGGTATTACAGGATTTTCTTTATCAACATGATGAAATACCTTGATTTGTCTGGTATTTAATTCACTGGACTAGACAAACATTCCCATCCAGTCATTTAACCTATAAGAAGAGTTTTAGAATTCAAaaaatgcaacttaatttttaatggattattttcccattttaaagaaataatttgacatttttgtaaataagCTTAGTCGCTTTCTTGCCAACAGTtcgatgagaagattgataccactctcccATCTATGTGATAAATATGTTGCTGGATCCTGCcgcagcttagcttagcttagcaaaaagactaaaaaactcactaattaacatgttaggTCGGTACAAAAACCACAACCAACGTGACATTTTTTGGGTTTTCTGTACAcgttaaacaaacaagatgttagtgagctttagagttgCTGGTAACACTGCTAGGCTAACCAGCTGCTAGCTGTATCTTCATAATTAACATGCACAGATATGAATGATTTCGATCcgctcatctaactcttggcaagaaaagCAAGCAGATGTACTGTAGTTCCTAAAATAATTCCTTAAATACAAGATTAAATATCACTTGGTAGAAAACAATATAGTTATTTTGTTAGCATTTACCATCCACAGTGCCTGTGAGAAATACTAatagttttatatttgttaaaataaattcaAGTCCATGTTTACTGTTCAGTACAGTAGCAGATACCCATCTAGCTTAGACTCTAGACAGAAACCTTCTCACTGAGGCCACTGAAtatggactttcaatttgaattacgaataaatatttcctccataactCAAAGACTGGAAAAGTAATTTAGAACTGAAACCAGCCGTTTTGTCACAACAGACCTCCTGTtgaccactagggggcgctttacagcacacactcacacctgaGCAACACTTAATTTTCCAGAACTTCATTTCAGAAAAATCATAACCACTATTGGTCTTAAGATACAATTGCACTCCTATCAAGTTTTGCTTTAAGAaaaggaaattatttttgtatgtttaGTGATTGTTGATTgctgaaagctccagaaaaagAGCTAAGACTTTTCTAGAATGCCCACAAGTCCTCTTCTACCTCTGAGTTGTTTTTCAGTAGTTGGATACATATATATTGGGTGTGGCTTAATACATACCTGTTTAATTTAATCCCGTAATTAATATTAAAATGGACCAGAATAATATTTCATCATGGCCCACTAGAGTTTGATGAGAAGATTGGTACcactcatgtctgtgtgttaaacATGGAGTTGAATACTATGAGATTAGAtaagcataaagactggaagaagggtgaaacagctagcctgactctCTCTCCAAAGTTTAAAAATCAGCCTaccactaatgtaaaaaaatcttttggGGGGGAATAGGTGTTGTAAATATGTATTGGCAACAGCTGAGTGCAGTGACTGTCTGAGTCTTGTCACAGTGAGATGAGAGACGATTTCTACATGTTTTACTAAGCTAATTGCCTTCATATTTAATGCATAGTCACGAGATGGCATAAATCCTCTTCTCACTGGACTCTCGGAAAGatacaaataaagaaaacaatcaTTTACCAAAATGAAccatttctttaaattttttgggATTTAAAAGGTAATGTCACGGTTTTGGGTTATTGATTGTCAAAGAGAAACTTTTTGGGGTCGATTCTTGTTctgatttgactttttttaaaggccTCGTCACTAAACAAAGCATATACTGCATGTTTATGTCAAaggtatatttatatattcttttttttttttgcaaattgaGAAAAAATATGCTTTGAGTAAATAGTTAAGACAATCAGTGTTTACTACCAGAAGATTTGGAGCATAAATTCAGCGTTTGATGTTATAAATAAGCATTATATAATCACATTCTGTACATACACATCATCCTGCTAAATCTACAGTGTTTCAACAGTGCACTGGGAGTTTGCTCACAATCTACTTGAGACAAAtagcatctaaaaaaaaaaaaaaaaa

Function

NR:

description
estrogen receptor beta 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030520 intracellular estrogen receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K08551 ESR2, NR3A2; estrogen receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782810.1 True 4828 mRNA 0.45 9 26139409 26159436

Neighbor

gene id symbol gene type direction distance location
jag2b jag2,LOC107377795 coding upstream 37011 26047472 ~ 26102398 (+)
knl1 NA coding upstream 146536 25970398 ~ 25992873 (+)
heca heca coding upstream 189999 25937301 ~ 25949410 (+)
clu clu,LOC102791322 coding upstream 237827 25888269 ~ 25901582 (+)
LOC120546553 NA coding upstream 302977 25830950 ~ 25836432 (+)
hadhb hadhb coding downstream 138890 26298326 ~ 26310715 (+)
map3k5 map3k5 coding downstream 357407 26516843 ~ 26596774 (+)
lrp11 lrp11,LOC102796877 coding downstream 437848 26597284 ~ 26604825 (+)
nup43 nup43 coding downstream 454334 26613770 ~ 26619262 (+)
lats1 lats1 coding downstream 460545 26619981 ~ 26628564 (+)
G187431 NA non-coding upstream 172109 25967006 ~ 25967300 (+)
G187378 NA non-coding upstream 234007 25902938 ~ 25905402 (+)
G187310 NA non-coding upstream 612537 25526447 ~ 25526872 (+)
G187299 LOC104926707,LOC100302438 non-coding upstream 698866 25405717 ~ 25440543 (+)
LOC120547280 NA non-coding downstream 88342 26247778 ~ 26249685 (+)
G187508 NA non-coding downstream 112932 26272368 ~ 26272595 (+)
G187535 NA non-coding downstream 155686 26315122 ~ 26315654 (+)
G187536 NA non-coding downstream 165080 26324516 ~ 26324734 (+)
LOC120546372 LOC103909865 non-coding downstream 720010 26879446 ~ 26885536 (+)
nudt14 nudt14,LOC107560374 other upstream 103177 26006854 ~ 26036232 (+)
LOC120546493 NA other upstream 170484 25955250 ~ 25968925 (+)
abracl abracl,LOC103376263 other upstream 204138 25929576 ~ 25935271 (+)
trnat-ugu_3 NA other upstream 919469 25219868 ~ 25219940 (+)
lama2 lama2,LOC104942190 other upstream 1129952 24810079 ~ 25009457 (+)
atp5mj NA other downstream 98039 26257475 ~ 26260895 (+)
gareml garem2 other downstream 105753 26265189 ~ 26283008 (+)
tfap2d tfap2d other downstream 254255 26413691 ~ 26431397 (+)
tfap2b tfap2b other downstream 279050 26438486 ~ 26452365 (+)
G187574 NA other downstream 523459 26682895 ~ 26685507 (+)

Expression


Co-expression Network