sox7 (sox7)


Basic Information

Item Value
gene id sox7
gene name sox7
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17952559 ~ 17955598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782812.1
ATGGCCGCCCTCATCAGCGCGTACTCGTCGTGGCCAGAGTCCTTCGAGTGTCCTCCAGGAGACGGGGACGTGCCCGACGGACATGGCCCGCACAGGACCCCCGTGGACAAGGCGCCGGAGCCGCGGATCAGACGGCCCATGAACGCGTTCATGGTGTGGGCCAAAGATGAGCGCAAACGGCTGGCCGTTCAAAATCCAGACCTGCACAATGCCGAGCTCAGCAAAATGTTGGGAAAGTCATGGAAGGCCCTAACTCCCCCTGATAAGAGGCCCTATGTGGAGGAAGCAGAAAGGCTTCGGGTGCAGCACATGCAGGACTACCCCAACTATAAGTATCGGCCTCGCCGCAAGAAACAGCTGAAACGCATCTGCAAACGAGTGGACCCTGGCTTCCTCCTGAGCGGGCTGGCCCCTGATCAGAACGCCCTGCCCGAACAGCGAGTCCTCTGTCACCCCCTCGACAAAGACGAGGGCAGCCCTAACGGTATCAGAAGTGGCTTCTCCAGCCCCAGCCCTGCTCTGCCCAGCGTCAGAAGCTTCAGGGACCCAGCCGGTTCCAACAGCAGCTTTGACACCTACCCCTACGGCCTGCCCACTCCCCCTGAGATGTCCCCATTAGATGCCATGGACCACGAACATGTACCCCCCTCTTATTATTCAACATCTGGTAGCTCCTCCTGCTCTTCCTCCTGCCCAGATGAGCACCACCAGAATCAGACACACATGGGCAGCCCACCCCCTTACCACACTGACTACACTCAGACCCAAATTCACTGTGGGGGCGCACACATAGGTCACATCTCTCACATGTCCCAAACTGGTGGCGCTGGACTGATCCATGGCCCTCCGCTGTCTTACTACAGTACCTCATCTTTCCACCAGATTCACCACGGGCTCCACCAGGGCCACCTGGGTCAGCTGTCCCCCCCACCAGAGACACAGGGTCAACTGGAGACTCTAGACCAGCTGAGCCAGGCAGAGCTTCTGGGTGAGGTGGACCGCGATGAGTTTGACCAGTACCTGAACTCCACTGGGACTGGGTTCCATCCTGAGCAGGGCAGCAGTATGACCGTTACAGGACACATCCAGGTGGCGTCGGCCGCCACTGCTTCTGCCACTGCCTGTCCAACCAGCACCACAGAAACCAGCCTCATTTCTGTGCTAGCGGACGCAACGGCGGCCTACTACAACAACTATGGCATCTCGTAAGCTTGGTCACAGCACCCGTTATACTTGTGGCTGATCAGAGACACTACAGGGGTTAAAATGGGTGAAGAAATTTGGGATAATTTTGCACTTGGGTGCCAGTAAGGGAAAGATTTCTGTGCTCTCATCTGTAATTTTTAAAATCCTGTATTAGCATCTATGAGCAACATCATCCCACCATGATTAAAACCTGAACTGATTACGGAGCAATGTGATTGTCTGGAGCCGAGGAAAAAACAAAGAGCAATTGGAGGAATACGAAGAAAGGGAGATGGACACCTCAGGGATGCAGACACAAATACTATAGTATGCCACCTCCAGTTGACATGACGCTTCTAAACCAGAAGAACAATCGTAAAGACTTGTTGTCCACTTGTAAATGTCACCAGTTACTGTTGCCACTGCGGCATGTACAGATGCTCTTTAGAAACTAATTTAAGTCCTTTGATGTTTCGCATAAATGCTAACTGTAATGCTATTATCGACGCTTTCCATTCGAATGTTTGTATTCTATGTTCTCGCTCTCATTAGCTTGGGAGTCTTACCTCAGTAGTTGTAATTGAATGAGGTTTTAGTTGGACATTTCTTATGCAAATTAACAAAATGGTGTATAATGAAGAAAAAAGGCGTTTATACTTCTTCTCAAGTActtaataatatataatcatAACCTCTACGATGAAAATAATAATGGTAACTATAACTGTATGCTGATTTAGGTTTGTGAAAgacaataatttaaaataaagttcaATTTTTATATTAA

Function

symbol description
sox7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within artery development and vasculogenesis. Predicted to be located in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; hindbrain; intermediate cell mass of mesoderm; and mesoderm. Orthologous to human SOX7 (SRY-box transcription factor 7).

NR:

description
PREDICTED: transcription factor SOX-7

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782812.1 True 1972 mRNA 0.50 2 17952559 17955598

Neighbor

gene id symbol gene type direction distance location
pinx1 LOC102299901 coding upstream 3114 17919578 ~ 17949445 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding upstream 39529 17906741 ~ 17913030 (+)
mtmr9 mtmr9 coding upstream 48046 17888641 ~ 17904513 (+)
fam167ab fam167a,LOC102799533 coding upstream 143867 17800090 ~ 17808692 (+)
lca5 LOC104965141 coding upstream 152611 17791853 ~ 17799948 (+)
LOC120546768 NA coding downstream 20515 17976113 ~ 17993998 (+)
blk blk,LOC102291483,LOC102797075 coding downstream 46472 18002070 ~ 18011951 (+)
atraid atraid coding downstream 217571 18173169 ~ 18177104 (+)
nme6 nme6 coding downstream 238885 18194483 ~ 18198503 (+)
si:ch211-142k18.1 LOC104964445 coding downstream 318231 18273829 ~ 18282702 (+)
G185156 NA non-coding upstream 187767 17763969 ~ 17764792 (+)
G185155 rps12 non-coding upstream 188823 17760676 ~ 17763736 (+)
LOC120546941 NA non-coding upstream 264279 17686696 ~ 17688280 (+)
LOC120546942 NA non-coding upstream 281082 17669166 ~ 17671477 (+)
G185136 NA non-coding upstream 290746 17640961 ~ 17661813 (+)
G185254 NA non-coding downstream 101813 18057411 ~ 18059367 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding downstream 147427 18103025 ~ 18104904 (+)
LOC120546825 NA non-coding downstream 200372 18155970 ~ 18164654 (+)
G185323 NA non-coding downstream 225534 18181132 ~ 18181983 (+)
G185353 NA non-coding downstream 342265 18297863 ~ 18298151 (+)
G185237 NA other upstream 35311 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 258925 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 266161 17669172 ~ 17686398 (+)
map7b map7,LOC107374525 other upstream 577500 17341837 ~ 17375059 (+)
G184996 sec63 other upstream 656858 17293654 ~ 17295701 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other downstream 65358 18020956 ~ 18054926 (+)
znf513a znf513,LOC102795572 other downstream 171533 18127131 ~ 18140260 (+)
ylpm1 ylpm1 other downstream 642767 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 750258 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 1248556 19204154 ~ 19237033 (+)

Expression


Co-expression Network