crnkl1 (crnkl1)


Basic Information

Item Value
gene id crnkl1
gene name crnkl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32093951 ~ 32105660 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782828.1
ACTGTCATGGTGGCTGGCGCTTAATGTTGCCAAAACGTTTCGGTACCTGGTTTTAGTTTAGTTGTTTTCTAAACGTTTCAAGTGCGTTTGGTAGCTTAATTGTTCAGTGTTTTTGGGTTAAACCTGCCATTAGCCATGGCTTCCACCGCGGCGGGTAAACAGCGGATACCGAAGGTGGCGAAGGTGAAGAATAAAGCTCCCGCAGAGGTTCAGATCACTGCTGAGCAGCTGCTGAGGGAAGCCAAAGAGCGGGAGCTCGAACTTCTGCCGCCGCCACCCAAACAGAAGATCACCGATGAGGAGGAGCTGAACGATTACAAACTCAGGAAGAGGAAGGGGTTTGAGGACAACATCAGAAAGAATCGCACTGTCATCAGTAACTGGATCAAATACGCACAATGGGAGGAAAGCCTGAAGGAGATCCAGAGGGCTCGTTCCATTTACGAGCGAGCGCTGGACGTCGACCACCGCAACATCACTCTGTGGCTGAAGTATGCCGAGATGGAGATGAAGAGCCGGCAGGTGAACCACGCCCGCAACATCTGGGACAGAGCCATCACCATCCTCCCGCGTGTCAACCAGTTCTGGTACAAGTACACCTACATGGAGGAGATGCTGGGGAACGTCGCCGGCTGCAGGCAGGCGTTCGAGCGCTGGATGGAGTGGGAGCCCGATGAGCAGGCCTGGCACTCGTACATCAACTTTGAGCTGCGCTACAAGGAAGTGGACAAAGCTCGCAGCATTTATGAGCGATTCGTCATGGTTCATCCCGAGGTGAAGAACTGGATCAAGTACGCTCGTTTTGAAGAGAGGCACGGCTACATCGCCCACAGCCGGAAGGTGTACGAGAGGGCGGTGGAGTTCTTCGGAGAGGTTCATGTGGACGAAAACCTCTTTGTGGCCTTCGCCAAGTTCGAGGAGACACAGAAAGAGTTTGAACGCGTCCGGGTGATCTATAAGTACGCTCTGGACAGAATCCCCAAACACCAGGCGCAGGAGCTCTTCAAGTTCTACACCATGTTCGAGAAGAAGTTCGGAGACCGCAGGGGAATCGAGGACGTCATCGTCAGCAAACGAAGGTTCCAGTATGAGGAGGAAGTCAAGGCCAACCCACACAACTACGACGCGTGGTTCGATTACCTGCGCCTGGTGGAGAACGACGCCGACCCCGACACGGTGCGAGATGTTTACGAGAGGGCCATCGCCAACATCCCCCCCATCCAGGAGAAGAGACACTGGAAGCGATACATCTACCTGTGGATCAACTACGCGCTGTACGAAGAGCTGGAGGTCAAGgATCCTGAGAAAACGAGGCAGGTGTACCAGGCCTCTCTGGACCTCATCCCACATAAAAAGttcacgttcgctaAGATCTGGCTGCTCTACGCTCAGTTTGAGATCCGGCAGAAGAACCTGCAGGGAGCCCGAAAGGTCATGGGTACAGCGATCGGCAAATGCCCGAAGAACAAACTGCTGAAGGGCTACATCGAGCTGGAGCTGCAGCTGCGCGAGTTTGACCGCTGCAGGAAGCTGTACGAGAAGTACCTGGAGTTCAGCCCGGAGAACTGCACCACCTGGATCAAGTTCTCCGAGCTGGAGACCATCCTGGGAGACGTCGAGAGAGCCCGTGCCATCTTCGAACTCGCCATCGGACAGCCGCGGCTGGACATGCCTGAGGTGCTGTGGAAGTCCTACATTGACTTTGAGATTGAGCAGGAGGAGTTTGGAAACACCCGGAACCTTTACAAAAGGCTGCTGCAGCGCACCCAGCACGTCAAGGTTTGGATCAGCTACGCCAAGTTCGAGCTGTCGATCGACAGCGACGAGCGGCTGCAGAAGTGCCGGCAGATCTACGAGGAGGCCAACAAGGGCATGAGGAACTGCGAGGAGAAGGAGGAGCGGCTGATGCTGCTCGAGTCCTGGAGGGACTTTGAGAGGGAGTTTGGCTCCgacagcaccatggacagagtCCGGAAGCTGCTGCCGGAGAaggtgaagaagaggaggaagctgACGGCCGAGGACGGGTCGGACGCAGGCTGGGAGGAGTACTACGACTACATCTTCCCAGAGGACGCGGCCAACCAGCCCAACCTCAAGCTGCTGGCCATGGCAAAGATGTGGAAGAGGCAGCAGATTCAGGAGGACGAAAGTCCAGAAAAGTCTCCCGAAGCGGCCGAAGAGATGGCATCGCCGCCCTCGGGCGAGCCCGCAGCCGCTCCCGAGAACCTGCCGGAAAACGACTCGGACAGAAACACGGCGACGGAAACAGAACAGGACAAGACGTGCGACGATCGAGACGACAGTGGCAGCAGCAGCGAGAGTGAcagtaatgatgatgatgagaagaAAAAGGGGGAAGAgaatggaaagaaagaggagggtGGAGATGAAGATAAAGAGTAGATTCATGTTTCCCCGCTCAGACGTTCATCttggattctttttttctactgaatgttttctttaacaaaACCAGCTCACGAGTAGTCTTTATTGTATGACCATGTTTTCTGCATTATACAAACGTCAATTCAA

Function

symbol description
crnkl1 Predicted to be involved in spliceosomal complex assembly. Predicted to act upstream of or within RNA processing. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Human ortholog(s) of this gene implicated in basal cell carcinoma. Orthologous to human CRNKL1 (crooked neck pre-mRNA splicing factor 1).

NR:

description
crooked neck-like protein 1

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12869 CRN, CRNKL1, CLF1, SYF3; crooked neck

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782828.1 True 2538 mRNA 0.54 14 32093951 32105660

Neighbor

gene id symbol gene type direction distance location
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding upstream 209149 31881465 ~ 31884802 (+)
nkx2.2b NA coding upstream 224655 31866894 ~ 31869296 (+)
cebpz LOC104961443,LOC104960473 coding upstream 337033 31735570 ~ 31756918 (+)
LOC120547115 prkd3,LOC103372736 coding upstream 389588 31620408 ~ 31704363 (+)
LOC120546439 NA coding upstream 507002 31582418 ~ 31586949 (+)
cd109 NA coding downstream 5930 32111590 ~ 32145910 (+)
senp6a NA coding downstream 430075 32535735 ~ 32569277 (+)
nt5e NA coding downstream 993709 33099369 ~ 33127591 (+)
bub1 NA coding downstream 1095745 33201405 ~ 33228839 (+)
LOC120546516 NA coding downstream 1125374 33231034 ~ 33238327 (+)
G188819 NA non-coding upstream 107865 31985312 ~ 31986086 (+)
G188818 NA non-coding upstream 125010 31968623 ~ 31968941 (+)
G188816 LOC106633344,LOC106098344,LOC106674933,LOC106456206,LOC108426271 non-coding upstream 141299 31947198 ~ 31952652 (+)
G188809 xrn2 non-coding upstream 166818 31918999 ~ 31927133 (+)
G188785 NA non-coding upstream 182652 31839806 ~ 31911299 (+)
G188960 NA non-coding downstream 37456 32143116 ~ 32143380 (+)
G188971 NA non-coding downstream 96602 32202262 ~ 32202553 (+)
LOC120547295 NA non-coding downstream 123026 32228686 ~ 32229327 (+)
G188980 NA non-coding downstream 132823 32238483 ~ 32238824 (+)
G188987 LOC103366807 non-coding downstream 210640 32316300 ~ 32319175 (+)
LOC120546196 LOC105017826 other upstream 311885 31776963 ~ 31782066 (+)
LOC120546816 NA other upstream 479429 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 784555 31169067 ~ 31309396 (+)
G188352 NA other upstream 1211505 30611681 ~ 30882446 (+)
myo6a myo6,LOC103369425 other downstream 470796 32576456 ~ 32767003 (+)
mei4 NA other downstream 860178 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 1222432 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 1294141 33399801 ~ 33416086 (+)
G189269 NA other downstream 1348336 33453996 ~ 33458768 (+)

Expression


Co-expression Network