arf6a (arf6.2,arf6,arf6a,LOC106518576,LOC104956700,LOC101063995,LOC106608083,LOC105893149)


Basic Information

Item Value
gene id arf6a
gene name arf6.2,arf6,arf6a,LOC106518576,LOC104956700,LOC101063995,LOC106608083,LOC105893149
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14677540 ~ 14680093 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782856.1
AGGAAGTGGCGGCTGATCTGGGTCCGCACCTTTTCCGGTAACACAGCACCGCCGCCGCTGTGTGACTGAACGgctggggagagagagggaggaagagacaCATAGCGGCAAGAGAGGGGAGAAACGGCCCGGGGACTGGGGGATGATTGCCGCAGACGTAGGGGGAAGACAAGAAAGTCGGATGAATCAATGACCTTTTGAACGCTCTTCCTCTGGATGTCCCGGTGCAGAAACGGACCGGAGAGCTTATAAATATTCGGAGAAGAAAGACTTGAAATGTGGATTttgaaggaagtctgtgctcaaCGGCGAGTTTGAAACAAGGGGATGTAATTTTTTCTTCTTACATCGGAGGGCAGTGGATCATGAAAATATATCCCCGCCCAATTCTGCGAGGGCTACACACGTACTGCGCCCATTGAATGCTCCAATTCAAGCCGCTCAGGTCAGATCACCACCTTCCAGCTAATTGTATTGTAATCCAACGGTACACACTTGAAAGTCGCCGCCTTTAGAATATCGACACTGGTGTCAGCCCACCGCTGCCATCACGTGGAGGGCTCTCAGCACACACTGAAACTGTTAACTTCTCAGTTGTATTGAAAACCACTTCTAGTTTCTCTCATAAGAGAAGTCttggtttttcttttcttctaacAAAGTATTTATGCACAGCAACCAAGATGGGGAAAATGCTGTCAAAGATCTTTGGCAACAAGGAGATGAGAATATTGATGCTTGGACTTGATGCTGCTGGTAAAACTACCATCTTGTACAAGCTGAAGCTGGGCCAGTCGGTcaccaccatccccactgtTGGCTTCAACGTGGAGACCGTCACCTATAAGAATGTGAAGTTCAACGTGTGGGATGTTGGGGGACAGGACAAGATCAGGCCACTTTGGAGACATTACTACACAGGCACCCAGGGCCTGATTTTCGTGGTGGACTGTGCCGACAGGGACAGGATCGACGAGGCGAAGCAGGAGCTCCACCGAATCATCAATGACCGGGAGATGAGGGACGCCATCATCCTGATCTTCGCCAACAAACAGGACCTCCCAGATGCCATGAAACCCCACGAGATCCAAGAGAAGCTAGGCCTGACCCGGATCAGAGATAGGAATTGGTACGTTCAGCCCTCGTGTGCGACATCAGGGGATGGCCTATACGAGGGCCTGACCTGGCTTACCTCAAATTACAAATCTTAATGTTTCTCCCATCACCAGCCTGGACACTTGGAGACAAAAAAGTAgctgagaataaaaaaaatttaaaaagaaaaaaaaataatgcaatcTGAAGCAATTAATACCATGACCTCTCTGCTGAGTGTATGTCAAAGAGAGTAGCAAttctattttgttttcttttcctttttgatAATGATGACTTCAATATAACCCCAGATTTCATTTATACAAAAgaccatttatttttttggctggctttctgtttttttgtagtTTGCTTTGGTTCACATTCTGTATATTCAGTACTGTTTAAATATACAATACTCTTACTTTTGAGCTCTTCTTTTGTTTTCCTCCTTTTTGTATACTTTCTTTGAGGGGACTTTggggacacacacacttatactgTTGCCCCCTGCTTAGCTCTCATTCAGTATTCTCATGACCCAGCTACATATCCAAAGGATGGGAAAGTCCAGAAACCATTGCCTACATCAGCATATCAATTTCATGACTCAAACTGCCTCTGTAATTTGTAAGAATGTGCATTACGGATGTGTTAGGaccttttggagaaaaaaaaaaaaaaaatagctgttTTTTATAATTGATTGTACTTGGGTGGTTGAGGAAATGTGTTCATACCTGTTTCATGTGCAGTGATCACATCCATCATGTCTACTGTGGCAGTTTGTTTGAAAGACACTATGTGGACGCTGGatattcacacacactgtgatatggatatatatttttgttgtttcaggTTCTAAATCCGTTACCACCAGTCTTATTATTGCCTCTTTTGTTTCTGCCAGAGCTTCCGTTATTGTCGAATATTTGTAGTTTCAGCTGCCTTAGGAGGGACCCAGGTTGCAGGTGCCCCAAAATCAAGACAGTTACTGCGGCAGAAGATATTCTCAACTGCTGAGTTTGCACtttgggagagagagggtggttACCAACCAGCTGGCTGTGCACATTTAGATTTTCTGACTGActtttggaccccaggaagtGTTTACGAAATTCCCAACCCCCCACCATCTCCAATGTAGgtgcttcttcttttctttttctttttcacccaTCGTCATCTACCTGTACTATTAAgatcctgcagacacacaccaacTCTGGGTTTATAGTTCATAGATACTGCTCTGTTTTATTTGTGTTCCCTTTTCTTTTGCTATGctgatgaaataataaaaaaatatatccaGATCA

Function

symbol description
arf6a Predicted to enable GTP binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be active in endocytic vesicle; recycling endosome membrane; and ruffle. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).
arf6 Enables GDP binding activity; GTP binding activity; and thioesterase binding activity. Involved in several processes, including positive regulation of actin filament polymerization; regulation of Rac protein signal transduction; and ruffle assembly. Located in several cellular components, including Flemming body; cytoplasmic vesicle; and filopodium membrane.

NR:

description
ADP-ribosylation factor 6

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0031529 ruffle organization biological_process
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0051489 regulation of filopodium assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0060998 regulation of dendritic spine development biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0001889 liver development biological_process
GO:0033028 myeloid cell apoptotic process biological_process
GO:0090162 establishment of epithelial cell polarity biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0097284 hepatocyte apoptotic process biological_process
GO:0001726 ruffle cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0031527 filopodium membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005938 cell cortex cellular_component
GO:0010008 endosome membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0031996 thioesterase binding molecular_function

KEGG:

id description
K07941 ARF6; ADP-ribosylation factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782856.1 True 2423 mRNA 0.44 2 14677540 14680093

Neighbor

gene id symbol gene type direction distance location
actr10 actr10 coding downstream 85305 14584030 ~ 14592235 (-)
cipcb cipc,LOC101061969 coding downstream 111009 14561407 ~ 14566531 (-)
znf410 znf410,LOC102793462 coding downstream 117080 14548038 ~ 14560460 (-)
LOC120547074 samd15,LOC102792272,LOC106518567 coding downstream 148187 14525235 ~ 14529353 (-)
lrfn5b LOC104919828,LOC103359906,LOC102792771 coding downstream 153369 14509448 ~ 14524171 (-)
fkbp3 fkbp3 coding upstream 23374 14703467 ~ 14706436 (-)
LOC120546409 mdga2 coding upstream 112020 14792113 ~ 14929662 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding upstream 441736 15121829 ~ 15128493 (-)
LOC120546952 LOC103369945,LOC104955612 coding upstream 519336 15199429 ~ 15201090 (-)
slc25a47a slc25a47 coding upstream 592085 15272178 ~ 15276579 (-)
G184356 NA non-coding downstream 480 14671894 ~ 14677060 (-)
G184346 NA non-coding downstream 21293 14655657 ~ 14656247 (-)
G184306 NA non-coding downstream 183972 14491099 ~ 14493568 (-)
G184295 NA non-coding downstream 238585 14432231 ~ 14438955 (-)
G184293 NA non-coding downstream 245368 14427804 ~ 14432172 (-)
G184360 NA non-coding upstream 9213 14689306 ~ 14689940 (-)
G184354 NA non-coding upstream 19591 14699684 ~ 14702181 (-)
G184381 NA non-coding upstream 361216 15041309 ~ 15041536 (-)
LOC120546290 NA non-coding upstream 383745 15063838 ~ 15068284 (-)
G184404 LOC103369948,LOC101169258 non-coding upstream 452124 15132217 ~ 15138715 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 9939 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 64594 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 179170 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 1186397 13473683 ~ 13491143 (-)
fkbp1b fkbp1b other downstream 1209475 13458602 ~ 13468065 (-)
rps29 NA other upstream 430147 15110240 ~ 15111479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 1108733 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 1385761 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 1466497 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 1810557 16490650 ~ 16517874 (-)

Expression


Co-expression Network