LOC120547308


Basic Information

Item Value
gene id LOC120547308
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16189000 ~ 16195106 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782858.1
ACTCTTTCTTTAAGTTTCACTTTCTGTTGTCTGTAAACGTAGACTACTGGATTTACGAAAGTAAAGCGGAAATACGGTCTCGaaggtttttgttttatttcggTTAGGTACTTGACAGCTATAACTGCAGCAACGGCGGACACTAATTTACCAAATTATTGACTTCAATCATCTATCTTGTGTTCGATCAGATCAAagatctctttctctttccttcctccatcTTCGAGCTCAGCTTGTCCACACAGCAGGAGaagtcatgtcacgattattgGCTGAAATAAGGCGCAGCAACAAAGCAGCCGCTCAAGTGTTGGAAAAGGCAGGTTTACGCACTGACGCTGACATCCAGTCACTGACTCGAGAGGAACTGCACGAACTGTTTCCTAAACATGAGAATTTCAAACTGAGAAGGGCCATCTTTGACATAATACAAAAACAGAAGCCAATTGATGTGATCCTAAGAGAACTGAAAGATTTCATCCCACATGAATCTTTCAGGAcTGCTCTATCCAACAACGGGGTCTTGGTTGATTACCTCCATATCCTGAAGGACATTAAGACCCAAATAAACAATGTCCAGAGTTTCCTTGATGCTCACATCGATATGCTGGAAGAATTCAGCAAAAATCCGCCAGATCAGGAGCCAGTCTCCTGTAATCCAGTGAAGCTCCCCAGTGGCCAGCCTGATGGCCGTTCACAAGGAGCACAAGGTACAGGTACCTCGGACACCAGTGGTCGAATGATGCTCCATACTGGCCAAACTGGTGGCCATCCACAAGGTCCTCAAACCACATTGGAGTACAAGATGATTGTTGGCAGTAAAACCTTTGGTGCACATCAACAGCTGATGGAGAAAGTTCGGGATCAAGTTCAGGATCAAGTTCAGCTCATTGAAAGCAGTCAGGATTACAAGCTCACTTTTGTCTTCTGCCCGATCAGTTCACGCGTTGCATCAGATGTTGAGGCAGCCATGACTGATGTTAGAGATGATACACCTGTCATTCTGGTGTTGATGCACCACACACGAGAGGTCAAGTACACAACATCTATGAGAACATGGCCAGCCTACGCTAACGTTGTGTTGCATGTCAACGTTTTCTATCATGAGACAATGCGTGGATTACTGAAGGATCAACAAAATGATGCCGCTGTTACCCAGATACAAAACAAATTACTGGAGTGTTTTGTTCCAAAAAGTTAACATTTCAGTGGAAATGCTCAGGGTGGGGATGCTGCAAGTGGTTTGGCTTGTAGTACTTCTGTTAGAGGTGGTGGTAACAACAGGTCTTCTGAAGCTGATGGTAATAGCGGTGTTTTTAGTAGACTAAAAGGTGTTACATCTCTGTGGCAATAGGCTGTGTTGGGCGGTATCCATGATGTTAATATTGAAGTTCACATCCCAAGTAAAACAATATGTAATGGATTACATCAAcagcaaaaataaatcaataaaaacatattgATTTAGACCATTTACTGtttgcagaaaacattttatcCTCCTTGGTAAAATAAGATCAGCTACTGATTGTGGTCTAATGGTGTCATGTATTCATGTTAATCATGGGTGTAAATactgtagctaaacacagagttcTCTGTCCATTTCCTGCTATTGTGTTTCTAAAGCTACATCATGTGACTTGTGGTTTGGTAACTGTTGATGCAAACAGTCAACACTTAAAAAAACTTTGACTTATTTAAAATATGAGTCAGACTTTATACTGTAgatcaaagaaaagaaaaatgttgacGAGTatttgagctgctgttaacCATCAGACTTTAGGGAGAGTTTTGGTTTAAAGTAGCTAAGTTAAAATGTGACCTTAAAACAGGATTTCTATAATCAAATGTCGTGGTCAGTTCTACAGCTGCgactgttgtttgtgtatattaGTAAGACTTGAATGTACATTAAGTGATGAAAGAGTGCAAAGGCCACAAAGTAGGTAACTTACAAATTATCTTTGTGTTTATCTACTGTAGGACAGATATTaaacaatttatgtaaaaataaagaataaacatTAAGATATTGTTTTGTATTAAAGCATGAATGTGCATTTTTGCTTTACCTTATTGCAAAATCATGTTGCAGGAAGCGTATGTAAGATGTGATGATTACTATACCCAACACTTACATGTAACAATAAACTGCAAGTATGGGTGTTA
>XM_039782859.1
AACTCTTTCTTTAAGTTTCACTTTCTGTTGTCTGTAAACGTAGACTACTGGATTTACGAAAGTAAAGCGGAAATACGGTCTCGaaggtttttgttttatttcggTTAGGTACTTGACAGCTATAACTGCAGCAACGGCGGACACTAATTTACCAAATTATTGACTTCAATCATCTATCTTGTGTTCGATCAGATCAAagatctctttctctttccttcctccatcTTCGAGCTCAGCTTGTCCACACAGCAGGAGaagtcatgtcacgattattgGCTGAAATAAGGCGCAGCAACAAAGCAGCCGCTCAAGTGTTGGAAAAGGCAGGTTTACGCACTGACGCTGACATCCAGTCACTGACTCGAGAGGAACTGCACGAACTGTTTCCTAAACATGAGAATTTCAAACTGAGAAGGGCCATCTTTGACATAATACAAAAACAGAAGCCAATTGATGTGATCCTAAGAGAACTGAAAGATTTCATCCCACATGAATCTTTCAGGAcTGCTCTATCCAACAACGGGGTCTTGGTTGATTACCTCCATATCCTGAAGGACATTAAGACCCAAATAAACAATGTCCAGAGTTTCCTTGATGCTCACATCGATATGCTGGAAGAATTCAGCAAAAATCCGCCAGATCAGGAGCCAGTCTCCTGTAATCCAGTGAAGCTCCCCAGTGGCCAGCCTGATGGCCGTTCACAAGGAGCACAAGGTACCTCGGACACCAGTGGTCGAATGATGCTCCATACTGGCCAAACTGGTGGCCATCCACAAGGTCCTCAAACCACATTGGAGTACAAGATGATTGTTGGCAGTAAAACCTTTGGTGCACATCAACAGCTGATGGAGAAAGTTCGGGATCAAGTTCAGGATCAAGTTCAGCTCATTGAAAGCAGTCAGGATTACAAGCTCACTTTTGTCTTCTGCCCGATCAGTTCACGCGTTGCATCAGATGTTGAGGCAGCCATGACTGATGTTAGAGATGATACACCTGTCATTCTGGTGTTGATGCACCACACACGAGAGGTCAAGTACACAACATCTATGAGAACATGGCCAGCCTACGCTAACGTTGTGTTGCATGTCAACGTTTTCTATCATGAGACAATGCGTGGATTACTGAAGGATCAACAAAATGATGCCGCTGTTACCCAGATACAAAACAAATTACTGGAGTGTTTTGTTCCAAAAAGTTAACATTTCAGTGGAAATGCTCAGGGTGGGGATGCTGCAAGTGGTTTGGCTTGTAGTACTTCTGTTAGAGGTGGTGGTAACAACAGGTCTTCTGAAGCTGATGGTAATAGCGGTGTTTTTAGTAGACTAAAAGGTGTTACATCTCTGTGGCAATAGGCTGTGTTGGGCGGTATCCATGATGTTAATATTGAAGTTCACATCCCAAGTAAAACAATATGTAATGGATTACATCAAcagcaaaaataaatcaataaaaacatattgATTTAGACCATTTACTGtttgcagaaaacattttatcCTCCTTGGTAAAATAAGATCAGCTACTGATTGTGGTCTAATGGTGTCATGTATTCATGTTAATCATGGGTGTAAATactgtagctaaacacagagttcTCTGTCCATTTCCTGCTATTGTGTTTCTAAAGCTACATCATGTGACTTGTGGTTTGGTAACTGTTGATGCAAACAGTCAACACTTAAAAAAACTTTGACTTATTTAAAATATGAGTCAGACTTTATACTGTAgatcaaagaaaagaaaaatgttgacGAGTatttgagctgctgttaacCATCAGACTTTAGGGAGAGTTTTGGTTTAAAGTAGCTAAGTTAAAATGTGACCTTAAAACAGGATTTCTATAATCAAATGTCGTGGTCAGTTCTACAGCTGCgactgttgtttgtgtatattaGTAAGACTTGAATGTACATTAAGTGATGAAAGAGTGCAAAGGCCACAAAGTAGGTAACTTACAAATTATCTTTGTGTTTATCTACTGTAGGACAGATATTaaacaatttatgtaaaaataaagaataaacatTAAGATATTGTTTTGTATTAAAGCATGAATGTGCATTTTTGCTTTACCTTATTGCAAAATCATGTTGCAGGAAGCGTATGTAAGATGTGATGATTACTATACCCAACACTTACATGTAACAATAAACTGCAAGTATGGGTGTTA

Function

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process

KEGG:

id description
ko04621 NOD-like receptor signaling pathway
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782858.1 True 2178 mRNA 0.40 8 16189000 16195105
XM_039782859.1 False 2173 mRNA 0.40 8 16189000 16195106

Neighbor

gene id symbol gene type direction distance location
il20ra NA coding downstream 80428 16102053 ~ 16108572 (-)
ehd3 LOC103369145,LOC104927375,LOC100697227,LOC101483142,LOC101071455,LOC105919213,LOC103457740 coding downstream 90278 16082024 ~ 16098722 (-)
stum stum,LOC102783313 coding downstream 127093 16045919 ~ 16061907 (-)
epb41l2 epb41l2,LOC106936101,LOC103373577 coding downstream 208800 15921621 ~ 15980200 (-)
tmem244 tmem244 coding downstream 269360 15841146 ~ 15919640 (-)
LOC120547182 trdn,LOC103371166 coding upstream 13153 16208259 ~ 16231901 (-)
hddc2 hddc2 coding upstream 180780 16375886 ~ 16379169 (-)
LOC120547270 LOC104949332 coding upstream 206156 16401262 ~ 16409291 (-)
LOC120547269 soga3,LOC102312356,LOC102202636,LOC101478077 coding upstream 214193 16409299 ~ 16415197 (-)
elovl4b elovl4 coding upstream 223444 16418550 ~ 16426881 (-)
LOC120546331 NA non-coding downstream 43831 16125385 ~ 16145169 (-)
G184707 NA non-coding downstream 88268 16100144 ~ 16100732 (-)
G184705 NA non-coding downstream 124086 16064671 ~ 16064914 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding downstream 146785 16037750 ~ 16042215 (-)
G184699 LOC107390449 non-coding downstream 155270 16025218 ~ 16033730 (-)
G184730 NA non-coding upstream 55091 16250197 ~ 16251869 (-)
G184731 NA non-coding upstream 96284 16291390 ~ 16356567 (-)
G184755 NA non-coding upstream 184339 16379445 ~ 16382479 (-)
G184762 NA non-coding upstream 238995 16434101 ~ 16434513 (-)
G184801 NA non-coding upstream 255648 16450754 ~ 16535319 (-)
LOC120546332 akap7 other downstream 670 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 120691 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 393362 15788826 ~ 15795638 (-)
rps29 NA other downstream 1077521 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1521399 14657177 ~ 14667601 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 295544 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 630546 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 1071253 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 1428018 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 1569699 17764805 ~ 17766910 (-)

Expression


Co-expression Network