lratd1 (fam84a)


Basic Information

Item Value
gene id lratd1
gene name fam84a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17178364 ~ 17180711 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782861.1
CACGATAGCCGGAGCGCCTGGTGCGCGGTGCGAAGAGTGAGAGACAAGtgtaagaagaaagaagaaagagggaagaagaagaagaagagagaatgAGAGCAGGGGACCATGCAGCCCTCTGTACTAATGGACCATAAGGATATTTAACCATCTGCCCGGGGAGCGCACAGACACCGCAGTCCATGCCTCTGCCTTGCCAGGTCATTGATGGGAAATCAACTGGATCGGATCACCCACCTCAACTACAGCGAGCTGCCCACGGGGGATCCGTCCGGGCTGGAGAAGGACGAGCTTCGGGTCGGCGTCGCTTACTTCTTCTCtgacgaagaggaggaggtggacgACCGCACTCCGTCCGACTGCGGCTTCACCAAGGACCACAGCCCGGCCGAGGAGGGACCCTTCTCGGTCAGCGAGGTGGAGTACTCAGCCTTCTGCTCCCAGGAATGCATCTTCTCCAAGCTGCGGGAGAACGAGGACTTACATGTATACTCGGCCAAAACTTTGCTGACTATGTGCAAACCGGGGGACCTGCTGGAACTGGTGGCCACCGCGCAAGCCCCCCACTGGGCCATCTACGAGCAGGACGACCAGGTCATTCATCTGCACAAGGGCGAGATCCGCAAGGACAGCCTGCTTGAGATCAGCAACGGTCGCCACGGGAGGGTAGTCAACAATCGGTACCGGTACCGACCGCTTCCACCTGACCTAGTGATGCAGAACGCAGTGGGACACCTGGGCCTGAGCAGCGAGGAGATATGCTGGACCAACTCGGAAAGTTTCGCAGCGTGGTGCCGCTTTGGGAAACGGGAGTTCAAAGCAGGGGGAGAGGTGCACTCGGCGGAGCAGCAGTATTTCCTCAAAGTGCACCTGTCCGGCAGCGGGGTGCACACTCTGGTCTTTCGCAGTCTGGAGGACATGATCCGGGAGAGGAGGCGAGTGGACGCCAGTGGAATTCTCAAAGAGCTGTCTTTGGTTAACGGGGGCAAGGAATGATCAGGGATTCCGTTTGAAATCCTCTCCCCCTATCTCTCCCCCGCTCCCGCTGCGCACGGACGCACAGTTTTGCGCACAAGCAAACGTactcgcacacacgcacacaagcacacagacgCAAACACATGCAAGGACCTGTTGGTTTTGGACTTTCTGCTTGTTACGGATGGACCCCGGGCTGCGTCTGGACCACAGGCGCTCTGTGGAATTTCCATCAAATTGCAGAGTATTgaaaattgagagagagagaaagagagagagagagagagagagagagagagagagagagaaagagagagagagatgccaTATAAACAGACAACGCCCCTTCAGATTAGAATTCGTGCTGAGTGAGACACACGATTTCTGCTCAACCCATTGGCCCGAACAGCGAAAATCACCTTTAAAGACCGCACATAGCGCACACGGCTCGGTTTGGTTTTCTGTTTAATTTTCTCGGGATAATGGAATTGGCCCCCTCTCGGCTTAGGGCGCCTGCTGCGGCAGACCAGACGGTGAGAGATGGGGGGTGAAAGATAGGATCTGGGATGGCTCTAGAAAAGTCTCCCTTCTATTTTTTTACTGTTAGCTTTAAGACCGGGACTGACCATAACACAGATCCACTAATTCATAGACCTCTGACAGGCCCAGATGGATACGCAGTTGCCTAAACAAAGCATTTGGCTTGTTCAAGCTCCCATTTTGCCATAACAAGAGTATTGTCATTTTCACAATGCTGTCATCCTGCTCCACAgcactgggtgtgtgtgtaaattgtATTCATATATTGATTTCAATTTGAGTCccttatttttgtatttaagttTAGTGGATTTAACCCTGATCTCTTTTTTGGTTCAAATAAATGGAGGTTGAAATATGAAAATAA

Function

symbol description
fam84a protein FAM84A

NR:

description
protein FAM84A-like

GO: NA

KEGG:

id description
K22805 FAM84A, NSE1; protein FAM84A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782861.1 True 1885 mRNA 0.53 2 17178364 17180711

Neighbor

gene id symbol gene type direction distance location
ddx1 ddx1 coding downstream 212997 16956248 ~ 16965367 (-)
LOC120547041 NA coding downstream 222427 16937777 ~ 16955937 (-)
LOC120546412 NA coding downstream 244989 16912722 ~ 16933375 (-)
itsn2a itsn2 coding downstream 258686 16880795 ~ 16919678 (-)
LOC120547035 esrrg,LOC100695726,LOC102786194,LOC102294499 coding downstream 355299 16792438 ~ 16823065 (-)
scml4 LOC100701983,LOC102215682,LOC101464936,LOC102300852,LOC104950495 coding upstream 89150 17269861 ~ 17287641 (-)
sec63 sec63 coding upstream 110455 17291166 ~ 17306226 (-)
iyd iyd coding upstream 126401 17307112 ~ 17310447 (-)
armc1l LOC103368599,LOC104950028,LOC108242485 coding upstream 194486 17375197 ~ 17378628 (-)
myb myb coding upstream 285207 17465918 ~ 17474896 (-)
G184989 NA non-coding downstream 8102 17169689 ~ 17170262 (-)
LOC120547043 NA non-coding downstream 242183 16933693 ~ 16936181 (-)
G184903 NA non-coding downstream 353767 16824296 ~ 16824597 (-)
G184897 NA non-coding downstream 404093 16772721 ~ 16774271 (-)
G184877 NA non-coding downstream 415676 16709755 ~ 16762688 (-)
G185031 ppp1r14c non-coding upstream 131774 17312485 ~ 17332973 (-)
G185039 map7,LOC107374525 non-coding upstream 181298 17362009 ~ 17362903 (-)
G185054 NA non-coding upstream 215760 17396471 ~ 17399451 (-)
G185035 NA non-coding upstream 245493 17426204 ~ 17432964 (-)
LOC120546280 NA non-coding upstream 338060 17518771 ~ 17521010 (-)
gpatch2 gpatch2,LOC102785715 other downstream 342381 16825652 ~ 16835983 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other downstream 660490 16490650 ~ 16517874 (-)
LOC120546332 akap7 other downstream 990034 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 1110055 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 1382726 15788826 ~ 15795638 (-)
LOC120547341 NA other upstream 85648 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 442413 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 584094 17764805 ~ 17766910 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other upstream 730559 17911270 ~ 17913036 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 1309104 18489815 ~ 18506198 (-)

Expression


Co-expression Network