sf3b6 (sf3b6,pm14,SF3B6)


Basic Information

Item Value
gene id sf3b6
gene name sf3b6,pm14,SF3B6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10662117 ~ 10666300 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782864.1
GGAATTCCGTCACTACCAAGTGAACTGTCTACCGCTGCCATTTTAACCTAACGGGAAGAGTGGcgagatagctagctagctgggaaaCTGCGTGTTTGTTGTTCAGCGGTCTTATTTACATCTACAACACTTTCACCATGGCTATGCAAGCAGCGAAACGCGCTAATATCCGATTGCCTCCCGAGGTGAACAGAATCCTGTACGTCAGGAACCTTCCTTACAAGATCACAGCGGAGGAAATGTATGATATCTTTGGGAAATATGGACCAATACGTCAAATCAGAACAGGCAACACACCTGAATCGAGAGGAACGGCTTACGTGGTTTATGAAGACATCTTTGACGCCAAGAACGCCTGCGACCATCTGTCAGGCTTCAACGTCTGCAACCGTTACCTGGTGGTCCTCTACTACAACGCAAACAGAGCTTTCCAGAAGATggacacaaaaaagaaagaggaacagCTGAAGCTTCTAAAAGAGAAATACGGCATCAACACAGACCCTCCAAAGTAGCGTTCATCCACCTCCACGCCTCTCGCCTCCATGTTCAGAATCTTTCTCTGTCCATACAAACCTCCCAGGTTCCTTGGTTTTATGCTGGTGTCACAGATACAGATGTTGAaaatattctctctcttttttttttaaatgaaattaagacgatttttttttatttccatcagCAAATATGCGTGAAGTTGAACACCGTTTAGACGGGCAGTATGTGAGTTAACATCAGGGCAGGGAGCTGTTCACTCCTCTGTTTGGTTGATGATCCTGTCAAAGTGGTTGACCAGCGGGACAAACTCTTAAAACTAGATTTAGATGGTGACTGGTCACAGTACTCACCCTGGGCAAGATGTTGAAATCTCTGAGCATGTCACGTttcgctgttttttttttgtttgttttttgttaatcTTTTCATACTTCCACAATCTTACCTTAATTTAAAGCTAACCGTGgtcatgcagtgtgtgtgtgtgatatgaaaTTGAGTTGATCAGTACACACTATCTCAAGTGTATggtttctgtaaaataaatgtcCCTTTTCTTAAA

Function

symbol description
sf3b6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human SF3B6 (splicing factor 3b subunit 6).

NR:

description
splicing factor 3B subunit 6

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006739 NADP metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0003960 NADPH molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070402 NADPH binding molecular_function
GO:0048038 quinone binding molecular_function

KEGG:

id description
K12833 SF3B14; pre-mRNA branch site protein p14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782864.1 True 1063 mRNA 0.43 4 10662117 10666300

Neighbor

gene id symbol gene type direction distance location
fam49a fam49a coding downstream 212707 10398802 ~ 10449410 (-)
fzd3a fzd3 coding downstream 282990 10347000 ~ 10379127 (-)
lft1 LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013 coding downstream 433112 10226816 ~ 10229005 (-)
kif26bb NA coding downstream 453792 10178309 ~ 10208325 (-)
cnstb LOC103373900 coding downstream 488139 10148075 ~ 10173978 (-)
pla2g7 pla2g7,LOC102800283 coding upstream 27539 10693839 ~ 10708837 (-)
glrx5 glrx5 coding upstream 58170 10724470 ~ 10728525 (-)
LOC120547228 LOC104952422,LOC104931204 coding upstream 879886 11546186 ~ 11548350 (-)
LOC120546403 NA coding upstream 909173 11575473 ~ 11576057 (-)
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding upstream 953404 11619704 ~ 11634330 (-)
G183534 NA non-coding downstream 70779 10591080 ~ 10591338 (-)
G183531 NA non-coding downstream 95953 10565916 ~ 10566164 (-)
G183530 NA non-coding downstream 103998 10557487 ~ 10558119 (-)
G183497 NA non-coding downstream 428549 10220918 ~ 10233568 (-)
G183492 hnrnpu non-coding downstream 444991 10216351 ~ 10217126 (-)
G183594 NA non-coding upstream 88696 10754996 ~ 10780282 (-)
G183616 NA non-coding upstream 281516 10947816 ~ 10948114 (-)
G183621 NA non-coding upstream 297532 10963832 ~ 10964049 (-)
G183639 NA non-coding upstream 523354 11189654 ~ 11210793 (-)
G183656 NA non-coding upstream 780675 11446975 ~ 11447319 (-)
LOC120546776 NA other downstream 51492 10455244 ~ 10610625 (-)
G183528 NA other downstream 140707 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 561056 10099478 ~ 10101061 (-)
G183176 NA other downstream 1528645 9129573 ~ 9133472 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other downstream 1637552 9020960 ~ 9024565 (-)
G183650 NA other upstream 707808 11374108 ~ 11374615 (-)
ost4 NA other upstream 2241002 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 2294198 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 2479164 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 2589585 13255885 ~ 13303784 (-)

Expression


Co-expression Network