cnr1 (cnr1,LOC104936193)


Basic Information

Item Value
gene id cnr1
gene name cnr1,LOC104936193
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24408071 ~ 24412330 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782880.1
CCGCGCTAGCTTCATGGGTTGGGCAGATAAAGCTATATGGAAACACGTCACAGGGCTTGTAGGAGCGACGCTTCATAAgtgaagacacagagagaaagactggAGAGACGCGGGAGCAACCTGTGTCCACAAAGCAGGAGCGCACCTCAAGAGCGAAGACACTTCAACAGCTGATAAACTTATGTTACATATAGAATTTGAAAAAGAAAcgaataatgatgatgataatggtgGTTTCATTCTAACACATGCATACTGGTGTGTCTCTCTTTTTATGTGAGATCTGTGCTGGTTGGATGATGCGCTTCTGACTTGGATTAACGCGCGGTGGTGAAGGACGATTCTGCGCACTTGGAAAAGAATTATGTAAGGTTGTCCGGGCATCTTAGACTGCAGCATTACCCTCAGACACAGTCATGAAATCTGTGCTGGATGGTGTGGCGGACACCACCTTCCGGACTATTACCTCTGGTTTACAGTATCTGGGCTCCAACGACGCTAACTATGACGACCCCCTCAATGATGTAGACTTCAAGGCGGGTTTCTCTCTGCAGAAGCCCTTATCTGCTTTCCGCAGCAACTCCTTCCCTAACAAAGTACCTGCGGATGAGGAGCTCATCCTCAAGGGCATCCCCTTCTACCCCACCAATGCCACAGACTTGTTCGGCAACAGGAGCACATTCAGAGATGAGACTAACAATATACAATGTGGGGAGAACTTCATGGACATGGAGTGTTTCATGATCCTGACACCCAGCCAGCAGCTGGCTGTGGCTGTGATGTCTCTGACTCTGGGTACCTTTACAGTGCTTGAGAACCTGGTGGTGCTCTGCGTCATCTTCCAGTCTCGCACCCTCCGCTGCAGGCCATCCTACCACTTCATTGGCAGTCTGGCTGTGGCTGACCTTCTTGGAAGTGTCATATTTGTCTACAGCTTTCTGGACTTCCATGTCTTTCACAGGAAGGACAGCCCCAATGTTTTTCTCTTCAAGCTGGGTGGAGTCACGGCATCGTTCACTGCCTCTGTGGGGAGCCTTTTCCTCACTGCTATCGACCGCTACATCTCCATACACCGGCCTCTTTCCTACAGGCGCATTGTGACACGGACCAAGGCTGTCATTGCCTTTTGTGTGATGTGGACCATCTCCATCATCATCGCAGTGCTGCCTCTACTGGGCTGGAACTGTAAACGTCTCAATTCTGTTTGCTCAGACATATTCCCTCTGATTGACGAGAACTATCTGTTGTTCTGGATCGGTATAACCAGCGTGCTGGTTCTTTTCATTATCTATGCCTACATATACATCCTGTGGAAAGCACACCACCATGCTGTGCGCATGCTGAGCCGCACCTCCCAGAAGAGCCTTGTTGTTTACTCAGCAGATGGGACTAAAGTGCAGACCACGCGCCCTGAGCAGACACGCATGGACATCCGTCTGGCAAAGACCCTGGTGCTCATCCTGGTGGTGCTGGTCATCTGCTGGGGCCCACTGCTTGCCATCATGGTCTATGACCTCTTCTGGAAGATGGACGATGACATCAAGACGGTATTTGCATTCTGCAGCATGCTCTGCCTGCTCAACTCCACTGTCAACCCAATCATCTACGCCTTGAGGAGCAAGGACATGCGGCGCGCCTTCCTCAGCTCCTGCCATGCCTGCAGGGGCAGTGCCCAGCAGTTGGATAATAGCCTTGAGTCAGACTGCCAGAACAGAAATGCCAACATTTCTGCCAACAGGGCTGCAGAGAGCTGTGTGAAGACCACTGTGAAAATAGCCAAAGTAACAATGTCTGTGTCAACTGAAACTTCTGGAGAGGCTGTCTAATTGGCCATCACGGAAGAAACTGTGTAAATGTCATCCTCCCCAAACAATGCCATTCAACACAATAAAGCAGACGTTAGATAtcccagagagaaaaaaatactctCCTGAAAGTATTGACTTATACATCCTCACATAGACGCTTTAATGGTTGCATTATTTTGCATTGGTTTGTGAGTACATGGTTTGCCAAAGTGCCAAATGATATTGCAAGTTAATAGGAACGACTCACGATTTGAAAGGATTTATCAAAGACTATCAAAAGTCTGCTGTTTACCATAGACTTAGTGATATCCAGTTAGTGAAggcatattatatttttttactgtgaATTCAGGTTTTGAAAACAATATATCTTCATTTATGGGATAAGGGGCTACTGACATTTTTAATTCGAGATGTTTTACTGTGTCATCTAGAATGTGTCTTGCACCAGACTTTCTACAGGCTTTATGTTGCATACAGATATTTCTAGGAGGGAATGGTAAAGAAAAAAGTTCAAATGACTGATTGTTTATTTCCAAAATTACCATTAAACATGTCACTTTTGTACTTCTTTATGACAACACTCAGTGGGTGGCAAAATGTGTTAAGAGATTTGAGAAATGCAAGGTGATTCATGCTCAatataaagaaaacaacaacaacaacaaccatatTTATCACTATCTGAGAAATGAGAGGTGATTCATGCTCAAGATAAGAAAACCATATTAATCACCATCACAAATAAACTCTAATAAGATGGAGGTAAATGGATTCACAGCTTCTGAGTGTCAAATCGGGAATGGCATTTTCTGTGGCAGTGACGATCGTCCCTGTTGTCCATTTCTTTACCCCGCTAGCTGTTAGACGTTTAGAGTAATGTGTCTTTGTTCAAATGTATACCTAACAACTGTACAGTGTTTTCTTGCAAAATAACGTGTTCAAATCCACTCCTTCAGCTATACAgccaacatcaacaacaacaacaacaacaacaacaagcttTTGACCAAAGCTTGAACACATCAAAACTGCATTTGGACGCAGTGTGCTGGTCACTACTGTAACAAACTGAAGTGTTTTTTGACTATAGCTGCTTTCATCAAATGTATGATTTTACTGGATTCAGCCTTGTATGTGCGTGATACCTTGTGACTTGGTGATATATTTCCAACCCCAAGCCGTTTGATCATTGCAGTGAGTTGTTTTAGTGCTACTGTTGCAGCGGGGCATcatttaggaaaataaaagcaaCCCATGCACAGGCCTAGTGAAGTACTTTTGGCGTAATTCTAAATACAGATATGTCTGCTGTTAATTTTACTTatctaaacaaataaacaaggGTATTTTCATTAGCTGGTAACTTGGATGGAagtctgtgtgtatgcattgTGTGGATACCCGACAACGGAACTTGTAAAATAATCTAAgaagatgtgtttttttctagTAGATGATGTAGTACTTTTAATCTAGAAATCTCACAGCACAATTGTTCTCTAGACATTTATCGTGTTGTAAAGTTATCCAGACAGCTGTTTATCAGTATGCTTTGCTGCCTCTTGTATTATTGAGTATTGAAGATCAAAATGTCAACTGTCAAGTGGCTTCTGTACAGTGGTGGCTTAATGAGGACTTAAAAACCACAATCAGTCAAGTGTTTTTAGTATTGCTGTTTTCAAACTTTTGAATAAAGTTGCAGCTGGTTGTCATTTC
>XM_039782881.1
CCGCGCTAGCTTCATGGGTTGGGCAGATAAAGCTATATGGAAACACGTCACAGGGCTTGTAGGAGCGACGCTTCATAAgtgaagacacagagagaaagactggAGAGACGCGGGAGCAACCTGTGTCCACAAAGCAGGAGCGCACCTCAAGAGCGAAGACACTTCAACAGCTGATAAACTTATGTTACATATAGAATTTGAAAAAGAAAcgaataatgatgatgataatggtgGTTTCATTCTAACACATGCATACTGGTGTGTCTCTCTTTTTATGTGAGATCTGTGCTGGTTGGATGATGCGCTTCTGACTTGGATTAACGCGCGGTGGTGAAGGACGATTCTGCGCACTTGGAAAAGAATTATGTTGTCCGGGCATCTTAGACTGCAGCATTACCCTCAGACACAGTCATGAAATCTGTGCTGGATGGTGTGGCGGACACCACCTTCCGGACTATTACCTCTGGTTTACAGTATCTGGGCTCCAACGACGCTAACTATGACGACCCCCTCAATGATGTAGACTTCAAGGCGGGTTTCTCTCTGCAGAAGCCCTTATCTGCTTTCCGCAGCAACTCCTTCCCTAACAAAGTACCTGCGGATGAGGAGCTCATCCTCAAGGGCATCCCCTTCTACCCCACCAATGCCACAGACTTGTTCGGCAACAGGAGCACATTCAGAGATGAGACTAACAATATACAATGTGGGGAGAACTTCATGGACATGGAGTGTTTCATGATCCTGACACCCAGCCAGCAGCTGGCTGTGGCTGTGATGTCTCTGACTCTGGGTACCTTTACAGTGCTTGAGAACCTGGTGGTGCTCTGCGTCATCTTCCAGTCTCGCACCCTCCGCTGCAGGCCATCCTACCACTTCATTGGCAGTCTGGCTGTGGCTGACCTTCTTGGAAGTGTCATATTTGTCTACAGCTTTCTGGACTTCCATGTCTTTCACAGGAAGGACAGCCCCAATGTTTTTCTCTTCAAGCTGGGTGGAGTCACGGCATCGTTCACTGCCTCTGTGGGGAGCCTTTTCCTCACTGCTATCGACCGCTACATCTCCATACACCGGCCTCTTTCCTACAGGCGCATTGTGACACGGACCAAGGCTGTCATTGCCTTTTGTGTGATGTGGACCATCTCCATCATCATCGCAGTGCTGCCTCTACTGGGCTGGAACTGTAAACGTCTCAATTCTGTTTGCTCAGACATATTCCCTCTGATTGACGAGAACTATCTGTTGTTCTGGATCGGTATAACCAGCGTGCTGGTTCTTTTCATTATCTATGCCTACATATACATCCTGTGGAAAGCACACCACCATGCTGTGCGCATGCTGAGCCGCACCTCCCAGAAGAGCCTTGTTGTTTACTCAGCAGATGGGACTAAAGTGCAGACCACGCGCCCTGAGCAGACACGCATGGACATCCGTCTGGCAAAGACCCTGGTGCTCATCCTGGTGGTGCTGGTCATCTGCTGGGGCCCACTGCTTGCCATCATGGTCTATGACCTCTTCTGGAAGATGGACGATGACATCAAGACGGTATTTGCATTCTGCAGCATGCTCTGCCTGCTCAACTCCACTGTCAACCCAATCATCTACGCCTTGAGGAGCAAGGACATGCGGCGCGCCTTCCTCAGCTCCTGCCATGCCTGCAGGGGCAGTGCCCAGCAGTTGGATAATAGCCTTGAGTCAGACTGCCAGAACAGAAATGCCAACATTTCTGCCAACAGGGCTGCAGAGAGCTGTGTGAAGACCACTGTGAAAATAGCCAAAGTAACAATGTCTGTGTCAACTGAAACTTCTGGAGAGGCTGTCTAATTGGCCATCACGGAAGAAACTGTGTAAATGTCATCCTCCCCAAACAATGCCATTCAACACAATAAAGCAGACGTTAGATAtcccagagagaaaaaaatactctCCTGAAAGTATTGACTTATACATCCTCACATAGACGCTTTAATGGTTGCATTATTTTGCATTGGTTTGTGAGTACATGGTTTGCCAAAGTGCCAAATGATATTGCAAGTTAATAGGAACGACTCACGATTTGAAAGGATTTATCAAAGACTATCAAAAGTCTGCTGTTTACCATAGACTTAGTGATATCCAGTTAGTGAAggcatattatatttttttactgtgaATTCAGGTTTTGAAAACAATATATCTTCATTTATGGGATAAGGGGCTACTGACATTTTTAATTCGAGATGTTTTACTGTGTCATCTAGAATGTGTCTTGCACCAGACTTTCTACAGGCTTTATGTTGCATACAGATATTTCTAGGAGGGAATGGTAAAGAAAAAAGTTCAAATGACTGATTGTTTATTTCCAAAATTACCATTAAACATGTCACTTTTGTACTTCTTTATGACAACACTCAGTGGGTGGCAAAATGTGTTAAGAGATTTGAGAAATGCAAGGTGATTCATGCTCAatataaagaaaacaacaacaacaacaaccatatTTATCACTATCTGAGAAATGAGAGGTGATTCATGCTCAAGATAAGAAAACCATATTAATCACCATCACAAATAAACTCTAATAAGATGGAGGTAAATGGATTCACAGCTTCTGAGTGTCAAATCGGGAATGGCATTTTCTGTGGCAGTGACGATCGTCCCTGTTGTCCATTTCTTTACCCCGCTAGCTGTTAGACGTTTAGAGTAATGTGTCTTTGTTCAAATGTATACCTAACAACTGTACAGTGTTTTCTTGCAAAATAACGTGTTCAAATCCACTCCTTCAGCTATACAgccaacatcaacaacaacaacaacaacaacaacaagcttTTGACCAAAGCTTGAACACATCAAAACTGCATTTGGACGCAGTGTGCTGGTCACTACTGTAACAAACTGAAGTGTTTTTTGACTATAGCTGCTTTCATCAAATGTATGATTTTACTGGATTCAGCCTTGTATGTGCGTGATACCTTGTGACTTGGTGATATATTTCCAACCCCAAGCCGTTTGATCATTGCAGTGAGTTGTTTTAGTGCTACTGTTGCAGCGGGGCATcatttaggaaaataaaagcaaCCCATGCACAGGCCTAGTGAAGTACTTTTGGCGTAATTCTAAATACAGATATGTCTGCTGTTAATTTTACTTatctaaacaaataaacaaggGTATTTTCATTAGCTGGTAACTTGGATGGAagtctgtgtgtatgcattgTGTGGATACCCGACAACGGAACTTGTAAAATAATCTAAgaagatgtgtttttttctagTAGATGATGTAGTACTTTTAATCTAGAAATCTCACAGCACAATTGTTCTCTAGACATTTATCGTGTTGTAAAGTTATCCAGACAGCTGTTTATCAGTATGCTTTGCTGCCTCTTGTATTATTGAGTATTGAAGATCAAAATGTCAACTGTCAAGTGGCTTCTGTACAGTGGTGGCTTAATGAGGACTTAAAAACCACAATCAGTCAAGTGTTTTTAGTATTGCTGTTTTCAAACTTTTGAATAAAGTTGCAGCTGGTTGTCATTTC

Function

symbol description
cnr1 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including axon development; methionine metabolic process; and positive regulation of feeding behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in central nervous system; cranial ganglion; digestive system; head; and oocyte. Human ortholog(s) of this gene implicated in obesity; schizophrenia; and type 2 diabetes mellitus. Orthologous to human CNR1 (cannabinoid receptor 1).

NR:

description
cannabinoid receptor type 1A

GO:

id name namespace
GO:0038171 cannabinoid signaling pathway biological_process
GO:0007409 axonogenesis biological_process
GO:0007413 axonal fasciculation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004949 cannabinoid receptor activity molecular_function

KEGG:

id description
K04277 CNR1; cannabinoid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782880.1 True 3527 mRNA 0.44 2 24408071 24412330
XM_039782881.1 False 3522 mRNA 0.44 2 24408071 24412330

Neighbor

gene id symbol gene type direction distance location
rngtt rngtt coding upstream 31927 24279420 ~ 24376144 (+)
LOC120546721 NA coding upstream 129582 24259548 ~ 24278489 (+)
si:dkey-174m14.3 LOC102302461,LOC103359114,LOC101468873,LOC102795766,LOC102194912 coding upstream 155391 24225057 ~ 24252680 (+)
nt5c1bb LOC104946496,LOC101163217,LOC103359106 coding upstream 192111 24207326 ~ 24215960 (+)
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding upstream 339479 24030053 ~ 24068592 (+)
akirin2 LOC104936192,LOC106911218,LOC103359156,LOC103457369,LOC102236332,LOC103133163 coding downstream 1517 24413847 ~ 24417800 (+)
rars2 rars2 coding downstream 6930 24419260 ~ 24436323 (+)
LOC120546425 NA coding downstream 34578 24446908 ~ 24485599 (+)
LOC120546832 ppp1cb,LOC100692170,LOC103030509 coding downstream 86416 24498746 ~ 24506389 (+)
grcc10 clg15h12orf57,c7h12orf57,LOC102299093,LOC107105086,LOC105938778,LOC101473413,LOC102199733 coding downstream 103114 24515444 ~ 24518183 (+)
G187074 NA non-coding upstream 20903 24386956 ~ 24387168 (+)
G187027 NA non-coding upstream 173320 24211413 ~ 24234751 (+)
G186972 NA non-coding upstream 260853 24072763 ~ 24147218 (+)
G186961 NA non-coding upstream 482423 23868280 ~ 23925648 (+)
G186954 NA non-coding upstream 546137 23829525 ~ 23861934 (+)
G187158 NA non-coding downstream 224395 24636725 ~ 24639484 (+)
G187165 ptprk,LOC102777941 non-coding downstream 243640 24655970 ~ 24656643 (+)
LOC120546772 NA non-coding downstream 597183 25009513 ~ 25012350 (+)
G187212 NA non-coding downstream 698716 25111046 ~ 25143492 (+)
G187235 NA non-coding downstream 804823 25217153 ~ 25218783 (+)
extl3 extl3 other upstream 220207 24155487 ~ 24187864 (+)
LOC120547070 NA other upstream 261309 24144997 ~ 24146762 (+)
G186975 NA other upstream 324967 24079603 ~ 24083104 (+)
nfkbie nfkbie other upstream 818382 23578378 ~ 23589689 (+)
tcte1 NA other upstream 843642 23559498 ~ 23564429 (+)
G187094 bpnt1,LOC102799416 other downstream 94583 24506913 ~ 24507813 (+)
lama2 lama2,LOC104942190 other downstream 397749 24810079 ~ 25009457 (+)
trnat-ugu_3 NA other downstream 807538 25219868 ~ 25219940 (+)
abracl abracl,LOC103376263 other downstream 1517246 25929576 ~ 25935271 (+)
LOC120546493 NA other downstream 1542920 25955250 ~ 25968925 (+)

Expression


Co-expression Network