LOC120547327 (LOC104956175)


Basic Information

Item Value
gene id LOC120547327
gene name LOC104956175
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22589900 ~ 22591276 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782885.1
TGTATTGTTTGCTTGGTTTTGTTTGCCTCTTGCAACATTTTGTCCTGACTCATTGCTGGGAATAAATACACTCAAACCAAGTCCAGGATCAAAAACAGTAAAGAATTCTGCGGTGCCTTTCAGTGCTTTAAAGATGAACTTGTGGATGCTCCTGACTTTCACTGCGCTGGCTGAATGCGCCCACTCTTGCCCAGATCTGTGCTCCTGTTCCTTTCCACCTTCAGGTGCAGAGGTGGTGTGCAGCCAAAGCTCCCTCACACATTTCCCTGTAGATGGTTTACCCTCCAACACCACTCGGCTATCCGTCCAATCCACCAAACTTAGCAGTATCACAGCCAGTCATTTGAGTCCTGTGCCTCTTTTAAACAACCTCCAGCTTTATCACAACAACCTGACAAGCCTTCCTTCAGATCTACTGAAGGAAGTTCCTCACTTGAACATGTTGGATGTGACAGGAAATCAGCTGGTTCATCTACCTCCAAATGTCTTCAGCCATGCCTCACTTCGTAGTCTTGTGCTGAAGAATAATCTGATTGAAAAAGCTGATGCTGAGTGGTTTCCTGGCAACAGTAGTGTGATCTGGCTGGACTTGTCTGGAAACCGTTTAACTGGTGTATCTGCCGCTCTGCTTCAGAAGCTGCCCAATCTGGAAAATCTAGACTTGAGTGACAACAATCTGCAAGATCTACAACCTGACGCACTGAAGAACCTGCACCGCCTGGAGACACTGAATGTCGCTGGAAACAAATTAAGCTCCCTGAAACCTACAATGTTCACCCACAACCCAAAACTGTCCCAACTGTTTTTGCATGAGAATCAGCTCCAAGAGCTGCCGGCGACCCTCCTCCAGGGTCTCCAGCATCTTGATCTTCTGATGCTCAATCAGAATCAGCTGCAGCATTTCCCCTCGGAGCTGCTGGATGAGAGAAAATCCTCTTTCCAGATGATCTTAACAGGAAATCCCTGGGTGTGCGATGAGAGGATGGAGCATCTGTGGAAGTGGCTCGCTGTCCATCCTCAAAATGTCATATTTTTGGAGGATGTGACATGTGCAGGGCCTGAAGCTCTTAAACACCGACAGTTGGTCTCTTTAACTGACAGTGAGCTTGGACTTCACAAGGTTAAAAATGAGTGATTAGGAGGTggtaaaaaaaattgcatttatTGTTTACATTTCACTAAAATCATATGTAAAATGATACATTattcactgtgtcaaaggcTGAAATAAAACTTTATAATTCA

Function

NR:

description
PREDICTED: leucine-rich alpha-2-glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782885.1 True 1245 mRNA 0.45 2 22589900 22591276

Neighbor

gene id symbol gene type direction distance location
LOC120547328 LOC104956169 coding upstream 575 22587857 ~ 22589325 (+)
LOC120546968 LOC103362669 coding upstream 4693 22554860 ~ 22585207 (+)
LOC120547088 LOC104956167 coding upstream 36135 22541406 ~ 22553765 (+)
LOC120546366 LOC104963849 coding upstream 74209 22489046 ~ 22515691 (+)
LOC120546368 mrap2 coding upstream 104999 22481920 ~ 22484901 (+)
pdia6 pdia6,LOC102796876 coding downstream 19751 22611027 ~ 22621105 (+)
apobb.1 NA coding downstream 58966 22650242 ~ 22666743 (+)
LOC120546321 NA coding downstream 80549 22671825 ~ 22687350 (+)
LOC120546322 apob coding downstream 108783 22700059 ~ 22715832 (+)
pum2 pum2,LOC102798245 coding downstream 128839 22720115 ~ 22755144 (+)
G186506 NA non-coding upstream 52184 22535659 ~ 22537716 (+)
G186452 NA non-coding upstream 295203 22294442 ~ 22294697 (+)
LOC120547080 NA non-coding upstream 756118 21832948 ~ 21833782 (+)
LOC120546760 NA non-coding upstream 843346 21745581 ~ 21746554 (+)
G186297 NA non-coding upstream 1047119 21540588 ~ 21542781 (+)
G186578 rhob,LOC104947257 non-coding downstream 125694 22716970 ~ 22719893 (+)
G186622 NA non-coding downstream 208459 22799735 ~ 22800058 (+)
G186641 NA non-coding downstream 255596 22846872 ~ 22847674 (+)
G186697 NA non-coding downstream 425681 23016957 ~ 23018800 (+)
G186725 NA non-coding downstream 552154 23143430 ~ 23143648 (+)
lin28b lin28b other upstream 288315 22280967 ~ 22301585 (+)
G186394 mycn,LOC108233328 other upstream 524311 21985779 ~ 22065589 (+)
erh erh,LOC100699790,LOC101174968 other upstream 642900 21944743 ~ 21947000 (+)
gtf2h5 gtf2h5 other upstream 1417261 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 2729683 19852643 ~ 19860217 (+)
kcns3b kcns3,LOC103372653 other downstream 216603 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 370757 22962033 ~ 22966010 (+)
dtl dtl other downstream 496544 23087820 ~ 23095505 (+)
ppp2r5a ppp2r5a other downstream 504636 23095912 ~ 23142640 (+)
rsph3 rsph3 other downstream 601362 23192638 ~ 23196996 (+)

Expression


Co-expression Network