sesn1 (sesn1,LOC102782344)


Basic Information

Item Value
gene id sesn1
gene name sesn1,LOC102782344
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21274857 ~ 21323086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782901.1
CCTCCTATCTTTTCTACTCTGGGACTGACGTTACTGGTCAGTGCTGTGGTAAGGCTTTCCGTGGCAGAATACCTGCACCAAAGAATGTGGATAAACCTGTTGTAAGACAGCACAAACGTTAGTCCTACATCAAAAGATGGAAGTGCAGGACCAGGAGTCTCTGGGAAGATGGGACCGGCTGGGCAGCCGGGATGCTATCTCCAGAGCTAAAGCCATGGAGAACATCTGCCAGGACGTCATGAGGCAAGTGGAGGCCATCAGGCCCATACCATCATTGGCCCTGTCACCCCCAGCCTCAGGAAGCCCTCCCAAGAGTGACCTAAATGACATCCTGGCTCACCTCCTCATGCTGTCCAAACGGTGTCCCTATGACGACGTGAAGGAGCGATGTGTTCGGCTTTTACAGGGAGTCCAGGACTTGGGAGTAAGGATCCCAAGACCCTTAGGAAACGGACCAAGCAGATTTATCCCTGAAAAAGAGATTCTTCAAATCAGTAAAGTGGACGCCAGGACACAGTCGATATTTGAGGATGCGTTTGCAGCCCTCGGTCGCCTTGACAACATTTCTCTGGTGATGGGCTTCCACCCGCAGTACCTGGGGAGTTTTCTCCGGACGCAGCACTACCTGCTGCAGATGGATGGACCTCTGTCTTTGCACTACCGACACTACATCGGCATCATGGCAGCAGCTAGACACCAGTGTTCCTACTTGGTCAACCTCCACGTGAACGACTTCCTCCAGGTCGGGGGTGATCCCAAGTGGCTGAACGGCCTGGATGAAGCGCCGCAGAAGTTGCAGCAGCTCGGGGAGCTCAACAAAATCCTGGCCCACCGACCTTGGCTTCTCACCAAGGAACACATCGAGtgcCTTCTGAAGGCAGAGGAGCACAGCTGGTCCCTCGCAGAGCTGATCCACGCCGTGGTCCTCCTCACACACTACCACTCCCTCGCCTCGTTCACCTTCGGCTGCGGCATCACGCCCGAGATCCACTGCGACGGCGGACACACTTTCAGACCCCCCTCCCTCAGCCAGTACTGCGTCTGTGACATTGCCAATGGCAACGGACATGCTAATCACCACGACGATCCGCTTGGCAACCAGGAGATGTGTGGTGAGGTGGAGGTGCTGATGGAGCGCATGAAGCAGCTGCAGGAGTGCCGCGACGACGAGGAGGCCAGCCAGGAGGAGATGGCAACTCGCTTTGAGAGGGAGAAGACGGAGAGCATGCTGGTGGCCACAGCGGAGGACGAGGAGTGTGTCCCCTCCAGAGACATCTCCCGACACTTTGAGGACCCCAGCTATGGCTACAAGGACTTTTCCAGAAGGGGGGAGCATGTGCCCACATTCAGAGTGCAGGACTACAGCTGGGAGGACCACGGTTTCTCCCTGGTCAACAGACTGTACCCTGATGTTGGTCAGATGCTGGACGAGAAGTTCCAGATGGCCTACAATCTGACCTACAACACCATGGCAACACACAAGGATGTTGACACCAGTATGCTGCGCAGGGCCATCTGGAACTACATCCACTGCATGTTCGGCATCAGGTATGACGACTATGATTATGGCGAGATAAACCAGCTTCTGGACCGTAGCTTTAAGATCTATATTAAGACTATGGTGTGTAGTCCTGAGAAGACCACCAAACGAATGTATGAGAGCTTCTGGAGGCAGTTTCAGCACTCCGAGAAGGTCCACGTTAATCTGCTTCTTATGGAAGCGCGAATGCAGGCGGAACTGTTATACGCTCTGAGAGCGATTACCCGCTATATGACATGAAGTGCTTTTGGCGTTTTTATCGTTGTCTTTTTACTGTCTGTCATTGCTCATTATGGGacactttaagaaaaaaaaaaaaagaaaatcaaaggggggggggtgaattcaacaaaaatgtggAAGCGAAGTGAGAAGCCCTGGGTTGTGACAGTGCTTATTGGATGGATTTTGAGAAGAGGAACAGAACAAATGAAagcaaggaagaaaaaaaaaaaaaggaactgtTGAAGTCATCTCAAGCTACAA
>XM_039782902.1
AGAGGACGGTATTCTGCTGTAGGGCTGCAACAGCTGACTGCCGAGCACTTTACCCAGTGCCTCAAGGAACAAAGAGAGAAGGAAACAGCCATTCAGaatacttttttaaagattttttttattcccttcAAATAATCAAAAGTGCAGCGAGGACACGCGATGAGGCACGCGGTCGCCCCGGCAGAAAACGtggaaaataattattttgcaGTGACAGACCAGTTAAAGATATGTACCCATTGTGAACGGCTAAGCAAAAAGGACTTGGGAGTAAGGATCCCAAGACCCTTAGGAAACGGACCAAGCAGATTTATCCCTGAAAAAGAGATTCTTCAAATCAGTAAAGTGGACGCCAGGACACAGTCGATATTTGAGGATGCGTTTGCAGCCCTCGGTCGCCTTGACAACATTTCTCTGGTGATGGGCTTCCACCCGCAGTACCTGGGGAGTTTTCTCCGGACGCAGCACTACCTGCTGCAGATGGATGGACCTCTGTCTTTGCACTACCGACACTACATCGGCATCATGGCAGCAGCTAGACACCAGTGTTCCTACTTGGTCAACCTCCACGTGAACGACTTCCTCCAGGTCGGGGGTGATCCCAAGTGGCTGAACGGCCTGGATGAAGCGCCGCAGAAGTTGCAGCAGCTCGGGGAGCTCAACAAAATCCTGGCCCACCGACCTTGGCTTCTCACCAAGGAACACATCGAGtgcCTTCTGAAGGCAGAGGAGCACAGCTGGTCCCTCGCAGAGCTGATCCACGCCGTGGTCCTCCTCACACACTACCACTCCCTCGCCTCGTTCACCTTCGGCTGCGGCATCACGCCCGAGATCCACTGCGACGGCGGACACACTTTCAGACCCCCCTCCCTCAGCCAGTACTGCGTCTGTGACATTGCCAATGGCAACGGACATGCTAATCACCACGACGATCCGCTTGGCAACCAGGAGATGTGTGGTGAGGTGGAGGTGCTGATGGAGCGCATGAAGCAGCTGCAGGAGTGCCGCGACGACGAGGAGGCCAGCCAGGAGGAGATGGCAACTCGCTTTGAGAGGGAGAAGACGGAGAGCATGCTGGTGGCCACAGCGGAGGACGAGGAGTGTGTCCCCTCCAGAGACATCTCCCGACACTTTGAGGACCCCAGCTATGGCTACAAGGACTTTTCCAGAAGGGGGGAGCATGTGCCCACATTCAGAGTGCAGGACTACAGCTGGGAGGACCACGGTTTCTCCCTGGTCAACAGACTGTACCCTGATGTTGGTCAGATGCTGGACGAGAAGTTCCAGATGGCCTACAATCTGACCTACAACACCATGGCAACACACAAGGATGTTGACACCAGTATGCTGCGCAGGGCCATCTGGAACTACATCCACTGCATGTTCGGCATCAGGTATGACGACTATGATTATGGCGAGATAAACCAGCTTCTGGACCGTAGCTTTAAGATCTATATTAAGACTATGGTGTGTAGTCCTGAGAAGACCACCAAACGAATGTATGAGAGCTTCTGGAGGCAGTTTCAGCACTCCGAGAAGGTCCACGTTAATCTGCTTCTTATGGAAGCGCGAATGCAGGCGGAACTGTTATACGCTCTGAGAGCGATTACCCGCTATATGACATGAAGTGCTTTTGGCGTTTTTATCGTTGTCTTTTTACTGTCTGTCATTGCTCATTATGGGacactttaagaaaaaaaaaaaaagaaaatcaaaggggggggggtgaattcaacaaaaatgtggAAGCGAAGTGAGAAGCCCTGGGTTGTGACAGTGCTTATTGGATGGATTTTGAGAAGAGGAACAGAACAAATGAAagcaaggaagaaaaaaaaaaaaaggaactgtTGAAGTCATCTCAAGCTACAA

Function

symbol description
sesn1 Predicted to enable leucine binding activity and oxidoreductase activity, acting on peroxide as acceptor. Acts upstream of or within determination of left/right symmetry. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including anterior axial hypoblast; central nervous system; mesoderm; presumptive paraxial mesoderm; and pronephros. Orthologous to human SESN1 (sestrin 1).

NR:

description
sestrin-1 isoform X2

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10141 SESN1_3; sestrin 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782901.1 True 2026 mRNA 0.52 10 21274857 21323086
XM_039782902.1 False 1872 mRNA 0.51 9 21319339 21323086

Neighbor

gene id symbol gene type direction distance location
cd164 NA coding upstream 8284 21251980 ~ 21266573 (+)
ppil6 ppil6 coding upstream 23668 21247663 ~ 21251189 (+)
mrps10 mrps10 coding upstream 48052 21224551 ~ 21226805 (+)
dynlt1b dynlt1 coding upstream 95941 21177476 ~ 21178916 (+)
serac1 serac1,LOC102777075 coding upstream 104496 21163218 ~ 21170361 (+)
snx3 snx3 coding downstream 134475 21457561 ~ 21474022 (+)
ostm1 ostm1 coding downstream 178665 21501751 ~ 21506824 (+)
drc1 NA coding downstream 189488 21512574 ~ 21525302 (+)
fndc1 fndc1 coding downstream 294253 21617339 ~ 21653568 (+)
LOC120546740 wtap coding downstream 357436 21680522 ~ 21686917 (+)
LOC120546175 NA non-coding upstream 121673 21151444 ~ 21153184 (+)
G186106 NA non-coding upstream 212881 21060757 ~ 21061976 (+)
G186094 syne1,LOC103355013,LOC106946714 non-coding upstream 241675 21032641 ~ 21033182 (+)
G186088 LOC103355013 non-coding upstream 250979 21019821 ~ 21023878 (+)
LOC120546176 NA non-coding upstream 283439 20989305 ~ 20991418 (+)
G186210 NA non-coding downstream 24858 21347944 ~ 21348581 (+)
G186220 NA non-coding downstream 151466 21474552 ~ 21475304 (+)
G186297 NA non-coding downstream 217502 21540588 ~ 21542781 (+)
LOC120546760 NA non-coding downstream 422495 21745581 ~ 21746554 (+)
LOC120547080 NA non-coding downstream 509862 21832948 ~ 21833782 (+)
gtf2h5 gtf2h5 other upstream 102218 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 1414640 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 1626701 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 1654074 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 1733025 19429595 ~ 19541832 (+)
erh erh,LOC100699790,LOC101174968 other downstream 621657 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 662693 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 957881 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 1484793 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 1638947 22962033 ~ 22966010 (+)

Expression


Co-expression Network