hlx1 (hlx,LOC102784911)


Basic Information

Item Value
gene id hlx1
gene name hlx,LOC102784911
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23391206 ~ 23395336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782913.1
GTAAGGGCGTGATGTGAGCGAATGCAAAACAGCCATTGGCTCAGAAAGCAACCAATCAGTGTCAGCAGAGAAACTTCAGAGAGGAACTGCAGGGTTTGGATTTCAGAGTTGGGAGAACGATTTTGGCACTGACACAAAGAGGACGGTCGTCTATCCCCCTAAAACGCCATCCCTGCTTTTTTACATGCCTGTCCGTTTATACCCTCTTCTGAGAAACAATAAGACGCATTAGAGGCTGCGGGATGTACACGGCCGGGCTGAACCCGTTTTACGCGTCAAATGTTAGCCTCTGGTCTGCGTACTGCGCGGGGGGCTTCGCTGTGGATACGATGAAGAAACCCTCGTTTTGCATCGCAGACATTTTGCAGGCTGGAGATGGAGAGAACATCCCGGGATCGTCGGCCCTCATGTTACATATGGGACACCACCACCGCGCGCAGCACGGGCACTCCGGCAGCTCGCCGCTGCGCCCTTCTCCCGTCGCGCCCGAGCCGTCGGTGTACGGCGCGAGGGTGAGTCCGACTTCTCCTTACCACAGACACGGACTACAGCTCACATCAGTCAGAACTGCATTTAACTCCCAACAAGCTCCCCCGCCTTCAAGCAAAGACCTCAAATTCGGAATTGATCGGATATTGTCGACAGACTTTGATCCAAAAGGCAAAGACAAGTCGTCATTAAAAGATCTCACATCCATCGTTAGCTCGAACCGTCAGTCAGGGATCCACATCCCCATTCAGCCTCCGGCCAGCCAGTACTTCTCCTGCATAGACCCCGGGATGAGCGACGCGTCCTCCATGATGAATTCActaggcagcagcagcagcaggcattCAGGCCAGCATCAGTTTCAGGACACCTTCCCAGGCCCGTATGCTGTCCTCACTAAAGACACCATGCCACAGACGTACAAGAGAAAAAGGTCGTGGTCGAGGGCAGTGTTTTCAAACCTGCAGAGGAAAGGACTTGAGAAGAGAtttgaaatacagaaatatgtcACCAAGCCGGACAGAAAACAGCTGGCTGCCATGCTCGGGCTGACAGACGCTCAGgtgaAGGTGTGGTTCCAGAACAGACGCATGAAGTGGAGACACTCCAAAGAGGCCCAGGCTCAGAAGGACAAGGACAAGGAGCAGGCGGACAAGAGTGCGTCTGAGTCCGGCAGCAGGGAGCCTAAAGAGCCGGCTGAGGAGTCCGAGTGTGAGAGCGAGGGACGGAGCGAGTGTGAATCCGACGACCCTCCGGAGGAGAACTCGGACGGACTTTTGGACATTTCTGAGCAAACAAACCAAACCAGCGTGATCATGAGCGGGAGCGGGCCGGCGAGCAGCGCGGAGGCGGCGgccacagtcacagtcacagacacGGAGGCCTCTCAGATACTGAAATGAAGGCTTTAGTCTATGAAcaatgacttttatttttatttttttgacagaaGAACGACAGTGATGTTAAAACGCACTTGGAGTGTCAATTCAATGCCACTATAAGATGTCTGCGACCTAAAGCCAGGGCTGTATCGGTCTAATTCCTGGGAACAAGTGGAGCAACATTGTTCACATGACACATTATTTTGGCCCAGACAAGCAACATAGCCCAAAAtcatttgttgattttattagatttttcgtttttttcttctctcttcagaGATCTAATGCTAAAAAAGAGGCTATTTTAAATGTAACGTCCGGCCACCTCCAGTGTCTCCGTACTGTCGTTTTCCTCTCAAGAGCTTTCGTGTGCATCATGTTTTCCTCATCTGAAGGAAACAATGCGCttgtgaattttatttttaggttATGAACCACTCGTTTCACGTGATCGATGAAATCTCAGAACATCACAGCAGTGTTcatgtatgtgttttgtttggATATATAGTTGTGCTATTTCGTTAATAATAATTTgcactgaaaatattgtaaataaaatgtttcataCTTTGAAAA
>XM_039782914.1
TAAGGGCGTGATGTGAGCGAATGCAAAACAGCCATTGGCTCAGAAAGCAACCAATCAGTGTCAGCAGAGAAACTTCAGAGAGGAACTGCAGGGTTTGGATTTCAGAGTTGGGAGAACGATTTTGGCACTGACACAAAGAGGACGGTCGTCTATCCCCCTAAAACGCCATCCCTGCTTTTTTACATGCCTGTCCGTTTATACCCTCTTCTGAGAAACAATAAGACGCATTAGAGGCTGCGGGATGTACACGGCCGGGCTGAACCCGTTTTACGCGTCAAATGTTAGCCTCTGGTCTGCGTACTGCGCGGGGGGCTTCGCTGTGGATACGATGAAGAAACCCTCGTTTTGCATCGCAGACATTTTGCAGGCTGGAGATGGAGAGAACATCCCGGGATCGTCGGCCCTCATGTTACATATGGGACACCACCACCGCGCGCAGCACGGGCACTCCGGCAGCTCGCCGCTGCGCCCTTCTCCCGTCGCGCCCGAGCCGTCGGTGTACGGCGCGAGGGTGAGTCCGACTTCTCCTTACCACAGACACGGACTACAGCTCACATCAGTCAGAACTGCATTTAACTCCCAACAAGCTCCCCCGCCTTCAAGCAAAGACCTCAAATTCGGAATTGATCGGATATTGTCGACAGACTTTGATCCAAAAGGCAAAGACAAGTCGTCATTAAAAGGCCCGTATGCTGTCCTCACTAAAGACACCATGCCACAGACGTACAAGAGAAAAAGGTCGTGGTCGAGGGCAGTGTTTTCAAACCTGCAGAGGAAAGGACTTGAGAAGAGAtttgaaatacagaaatatgtcACCAAGCCGGACAGAAAACAGCTGGCTGCCATGCTCGGGCTGACAGACGCTCAGgtgaAGGTGTGGTTCCAGAACAGACGCATGAAGTGGAGACACTCCAAAGAGGCCCAGGCTCAGAAGGACAAGGACAAGGAGCAGGCGGACAAGAGTGCGTCTGAGTCCGGCAGCAGGGAGCCTAAAGAGCCGGCTGAGGAGTCCGAGTGTGAGAGCGAGGGACGGAGCGAGTGTGAATCCGACGACCCTCCGGAGGAGAACTCGGACGGACTTTTGGACATTTCTGAGCAAACAAACCAAACCAGCGTGATCATGAGCGGGAGCGGGCCGGCGAGCAGCGCGGAGGCGGCGgccacagtcacagtcacagacacGGAGGCCTCTCAGATACTGAAATGAAGGCTTTAGTCTATGAAcaatgacttttatttttatttttttgacagaaGAACGACAGTGATGTTAAAACGCACTTGGAGTGTCAATTCAATGCCACTATAAGATGTCTGCGACCTAAAGCCAGGGCTGTATCGGTCTAATTCCTGGGAACAAGTGGAGCAACATTGTTCACATGACACATTATTTTGGCCCAGACAAGCAACATAGCCCAAAAtcatttgttgattttattagatttttcgtttttttcttctctcttcagaGATCTAATGCTAAAAAAGAGGCTATTTTAAATGTAACGTCCGGCCACCTCCAGTGTCTCCGTACTGTCGTTTTCCTCTCAAGAGCTTTCGTGTGCATCATGTTTTCCTCATCTGAAGGAAACAATGCGCttgtgaattttatttttaggttATGAACCACTCGTTTCACGTGATCGATGAAATCTCAGAACATCACAGCAGTGTTcatgtatgtgttttgtttggATATATAGTTGTGCTATTTCGTTAATAATAATTTgcactgaaaatattgtaaataaaatgtttcataCTTTGAAAA

Function

symbol description
hlx Enables sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; enteric nervous system development; and regulation of T-helper cell differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: H2.0-like homeobox protein isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09339 HLX1; homeobox protein HLX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782913.1 True 1955 mRNA 0.49 4 23391206 23395336
XM_039782914.1 False 1771 mRNA 0.49 3 23391207 23395336

Neighbor

gene id symbol gene type direction distance location
slc35f6 slc35f6 coding upstream 9992 23371884 ~ 23381214 (+)
kcnk3a kcnk3,LOC102784354 coding upstream 42850 23307723 ~ 23348356 (+)
LOC120546473 NA coding upstream 137757 23246999 ~ 23253449 (+)
ezrb ezr,LOC103355633 coding upstream 154034 23198834 ~ 23237172 (+)
tagapb NA coding upstream 204480 23160027 ~ 23186726 (+)
mia3 mia3 coding downstream 127551 23522887 ~ 23539844 (+)
rnf8 NA coding downstream 153242 23548578 ~ 23554266 (+)
slc35b2 slc35b2 coding downstream 194632 23589968 ~ 23597399 (+)
rbm25b rbm25,LOC108233444,LOC103353665,LOC102789801 coding downstream 215673 23611009 ~ 23624138 (+)
atp6v1d atp6v1d coding downstream 245539 23640875 ~ 23644644 (+)
G186747 NA non-coding upstream 115746 23268798 ~ 23275460 (+)
G186726 NA non-coding upstream 246916 23143959 ~ 23144290 (+)
G186725 NA non-coding upstream 247558 23143430 ~ 23143648 (+)
G186697 NA non-coding upstream 372406 23016957 ~ 23018800 (+)
G186641 NA non-coding upstream 543532 22846872 ~ 22847674 (+)
G186842 NA non-coding downstream 25563 23420899 ~ 23432383 (+)
G186843 NA non-coding downstream 39800 23435136 ~ 23435351 (+)
G186841 NA non-coding downstream 42904 23438240 ~ 23439520 (+)
LOC120546283 NA non-coding downstream 80363 23475699 ~ 23506564 (+)
G186882 hsp90ab1 non-coding downstream 207300 23602636 ~ 23607535 (+)
rsph3 rsph3 other upstream 194210 23192638 ~ 23196996 (+)
ppp2r5a ppp2r5a other upstream 248566 23095912 ~ 23142640 (+)
dtl dtl other upstream 295701 23087820 ~ 23095505 (+)
si:ch211-22i13.2 NA other upstream 425196 22962033 ~ 22966010 (+)
kcns3b kcns3,LOC103372653 other upstream 580686 22807879 ~ 22810520 (+)
tcte1 NA other downstream 164162 23559498 ~ 23564429 (+)
nfkbie nfkbie other downstream 183042 23578378 ~ 23589689 (+)
G186975 NA other downstream 684267 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 749661 24144997 ~ 24146762 (+)
extl3 extl3 other downstream 760151 24155487 ~ 24187864 (+)

Expression


Co-expression Network