LOC120546199



Basic Information


Item Value
gene id LOC120546199
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13339183 ~ 13398575 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XR_005636829.1
CAGTAGGGAGAGCGCATAAGTTTTGAGCTGCATTGGGCAGCTTCCTTCAATTAGAAACATGAGTAGAGAAAATACTCCGTTTTTCAGACTTGTGCTACATGGGTTCATCAGGAGGTTGTGGTGTGCAATAAGAAGTAGGGCACCCATGCAGGAAAACTGTGACTTGCCACCATCCTGTATTTGAGAGGATCATCAGAAAAGATGATGAAGCAGAACCAAGGAGGGGACCTGGACTCCAAACGGCATTTCCCATGTGCCTGAGCCTAGTGCAAGACACATCGTGTGAAAGAGgAGCTCCCAACAGCGCTGGCGAGGAGCTCGTAACCCAGAACAATAAAGCGCTTCCCCTCCCAGCCTCCTGGCGGTGACCTCCGCTGAAAGTTGAAGGTTCAACTAGCTACACGTGTCAGGGTTGTGACCTTTCACCCCCTCAGCGTCTCGCTctcctgctct
>XR_005636830.1
CAGTAGGGAGAGCGCATAAGTTTTGAGCTGCATTGGGCAGCTTCCTTCAATTAGAAACATGAGTAGAGAAAATACTCCGTTTTTCAGACTTGTGCTACATGGGTTCATCAGGAGGTTGTGGTGTGCAATAAGAAGTAGGGCACCCATGCAGGAAAACTGTGACTTGCCACCATCCTGTATTTGAGAGGATCATCAGAAAAGATGATGAAGCAGAACCAAGGAGGGGACCTGGACTCCAAACGGCATTTCCCATGTGCCTGAGCCTAGTGCAAGACACATCGTGTGAAAGAGCTTCATGGAATCAGCAGAAAATATGGAAAGTATGAGGGTCTTTTCTCAGTGTTATAACAATACAGGATAATCCCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005636829.1 True 453 lncRNA 0.51 4 13339183 13398575
XR_005636830.1 False 366 lncRNA 0.45 4 13351138 13398575

Neighbor


gene id symbol gene type direction distance location
LOC120546943 phip coding downstream 136846 13148651 ~ 13202337 (-)
si:dkey-261l7.2 LOC103457838,LOC106927103,LOC106964160,LOC103148020 coding downstream 194088 13141455 ~ 13145095 (-)
LOC120546166 LOC103355735,LOC104963358,LOC100702431,LOC102289960,LOC108231778 coding downstream 323956 12998089 ~ 13015227 (-)
LOC120547210 NA coding downstream 347262 12990575 ~ 12991921 (-)
LOC120547207 NA coding downstream 359184 12978663 ~ 12979999 (-)
mut mut coding upstream 38495 13437070 ~ 13458215 (-)
ubxn2a ubxn2a coding upstream 96363 13494938 ~ 13500594 (-)
LOC120546185 klhl29,LOC102787074 coding upstream 180736 13579311 ~ 13802160 (-)
trib2 trib2 coding upstream 421097 13819672 ~ 13827042 (-)
napbb napb,LOC103381049,LOC102194491,LOC102306363,LOC106518545,LOC102225024,LOC103457862,LOC107097573,LOC107378120 coding upstream 478657 13877232 ~ 13887170 (-)
G184049 NA non-coding downstream 20253 13318488 ~ 13318930 (-)
G184026 NA non-coding downstream 88747 13249591 ~ 13250436 (-)
G183981 NA non-coding downstream 304686 13034252 ~ 13034497 (-)
G183952 NA non-coding downstream 416376 12841032 ~ 12922807 (-)
LOC120546274 NA non-coding downstream 453408 12884370 ~ 12885775 (-)
G184162 NA non-coding upstream 443697 13842272 ~ 13842477 (-)
G184204 plcb1 non-coding upstream 720447 14119022 ~ 14141806 (-)
G184208 NA non-coding upstream 788853 14187428 ~ 14231705 (-)
G184217 plcb4 non-coding upstream 824400 14222975 ~ 14225219 (-)
LOC120546499 NA non-coding upstream 839851 14238426 ~ 14243275 (-)
runx2b runx2,LOC102312376 other downstream 35399 13255885 ~ 13303784 (-)
hmgn3 hmgn3,LOC104958971 other downstream 123283 13145464 ~ 13215900 (-)
LOC120547209 NA other downstream 331315 12960498 ~ 13007868 (-)
ost4 NA other downstream 430436 12907302 ~ 12908747 (-)
G183650 NA other downstream 1964568 11374108 ~ 11374615 (-)
fkbp1b fkbp1b other upstream 60027 13458602 ~ 13468065 (-)
mfsd2b mfsd2b other upstream 75108 13473683 ~ 13491143 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other upstream 1073626 14472201 ~ 14498370 (-)
naa30 naa30,LOC102795089,LOC104960600 other upstream 1172805 14571380 ~ 14612946 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other upstream 1258602 14657177 ~ 14667601 (-)

Expression



Co-expression Network