LOC120546274


Basic Information

Item Value
gene id LOC120546274
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12884370 ~ 12885775 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636849.1
ttactccgaaccatcactttaaagtttATAATGAATTGATTTGGACTAGTATCCATCTTCGTTTAGTGATGTTACACGCTGTAGTGTGTGACCTGCTTGAAATATCAATCAGTAATCCCTTCAACTACAGTATGACTATTGGTAAAACAGGAAATATGATTGATGTAGTACGGTTCCAGCCTGTGAAATCTGTTACCATCGTTGTGTCTCTTATGTTTCAAGGCATTACATTCAGTTGCACACTACTTCAGCTACAGAGAAACAGCATTTTGAATGGGTTGGCCTGGTGGAGTCTAAAATCAGACTCCTGGTGGGAAACATGGAGAGAAATGTGCACGATTCCCTGGGTCACATTCACTTCAGTCCTTCCCTGGATCCAGATCCAAAGAGCGAATGAGCACAAGGTGGCGGACTGGACTTGTCTTTAATACGGAGGGCTCTAAAAACCTAAAAATAGACTTGACCTTGGAACTCCTGTCCTTCAGTGATGCtaTCTACAGTCTGGCAGACAGCTTTAAGATATATGCAGAGGGGATGACCATATCAGCCACCTACGTGACCGGGGACAATGTCAGCTGGGAGATGCCTAATGCAGAATGCGAAAAGGGTCTTCAGTCCGAAACCGAAGCCCACAGTGAGCCGTCAAATCTCTGCCACACTACCAGATAGTCACACGCTATACCAGCCAAGGCCAAAGCTGACAAGATAAGCTAAACCAGTTTTTGGATGTGAAAATGTCTTAACTATTGCTTTAACCATGCCAAGTACTTGTGGTAAGATGTGAATAAAAATGAATCAACCAACCAAGCCCATGCTACAGTtgtcacacaaaaaaacaaaaaatattccTTCTTCTGTACAGGAATCAGTGTCTGTGACTAACGGCTCATCTGTCCAAGCGTCCACACCCAGCAAAGCTGCTTCCCCCTCCATGAGTCCACGGGGCCACAAAGAGACCTGGTTCTCCCCAATCTGAA

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636849.1 True 977 lncRNA 0.44 4 12884370 12885775

Neighbor

gene id symbol gene type direction distance location
LOC120546273 NA coding downstream 136632 12746386 ~ 12747738 (-)
ccnk ccnk coding downstream 181186 12695937 ~ 12703184 (-)
trnat-ugu_2 NA coding downstream 301129 12583169 ~ 12583241 (-)
nrxn3b LOC102203786,LOC101486071,LOC103457817 coding downstream 526139 12027548 ~ 12358231 (-)
tshr tshr coding downstream 966229 11893534 ~ 11918141 (-)
LOC120547205 NA coding upstream 61183 12946958 ~ 12948322 (-)
LOC120547206 NA coding upstream 70698 12956473 ~ 12957811 (-)
LOC120547207 NA coding upstream 92888 12978663 ~ 12979999 (-)
LOC120547210 NA coding upstream 104800 12990575 ~ 12991921 (-)
LOC120546166 LOC103355735,LOC104963358,LOC100702431,LOC102289960,LOC108231778 coding upstream 112314 12998089 ~ 13015227 (-)
G183910 NA non-coding downstream 253578 12588138 ~ 12630792 (-)
G183908 NA non-coding downstream 257664 12592618 ~ 12626706 (-)
G183898 NA non-coding downstream 324595 12540583 ~ 12559775 (-)
G183875 snw1,LOC102781075 non-coding downstream 362616 12518372 ~ 12521754 (-)
G183872 NA non-coding downstream 379355 12504685 ~ 12505015 (-)
G183981 NA non-coding upstream 148477 13034252 ~ 13034497 (-)
G184026 NA non-coding upstream 363816 13249591 ~ 13250436 (-)
G184049 NA non-coding upstream 432713 13318488 ~ 13318930 (-)
LOC120546199 NA non-coding upstream 453408 13339183 ~ 13398575 (-)
G184162 NA non-coding upstream 956497 13842272 ~ 13842477 (-)
G183650 NA other downstream 1509755 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 2273745 10455244 ~ 10610625 (-)
G183528 NA other downstream 2362960 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 2783309 10099478 ~ 10101061 (-)
G183176 NA other downstream 3750898 9129573 ~ 9133472 (-)
ost4 NA other upstream 21527 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 74723 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 259689 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 370110 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 572827 13458602 ~ 13468065 (-)

Expression


Co-expression Network