LOC120546280


Basic Information

Item Value
gene id LOC120546280
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17518771 ~ 17521010 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636850.1
GCTCTTCCTAAATGGGTGTGGAGAATTCCCAATGGCCAAAGATAATGTGCAGGGAACCACCTCAAGATAGAGGAACTATTCAGGCATGAATCATTGCTCCCTGGGGAGTTGAAATATAATGCCTTAAAGTGTAGTTGTATTCTATAGCCATAATTAGACAAAAGCCCAAATATGCCATATTTCTTCAACAAAATTGTCCTGTGGTTTTCAGTTCCCTTCTATTTCACTGCTCAtcttttctgtaataaaacattgtcCTATTGCAGTATCACACTGCTCTCCAGAGTGCAAGGATTGATTGACAGCATTTCTAATGCAATCCAAGAACTGCCACTAGACCCAGAACTTTACACATTGTTGGCATAATAACAAGGCCTGAGGCTTCCTGACACATGTTTGCACTGTGCTCCATTTTGAACCAAACAAAATCATCATCCCTTTGCTCTTTACTCTGTTTGTCCACACTGGTGTAATTTGACTTGGAACATGCAGGACTGAGAAACATCTACCACAACAGGAAAAGGACTGCCTCACTTCAATTGTTTGCACCGTGGAAGTTAAAAGACCCAAAATCCTGCCCTTTTCAAACTTGCCTTAAACGTGCCAGTGTAGTTATTGAATGCTGAAAAATAGCCTGGTCCATATAACAAAGCAGACTCATTTCAGAACTAATCACAGCAGTGGATATAACCTACTAGCAAAACTCTGTTTCAATGGAAAGATCCTGTGTCCCACGATGCATTTACACAAAATGGATAAGTACATTGAAGATGTCTTCCCGGAGCATTTTCTCAGGACTCAGCTTCATCTCGGGGCTTATCTGCCACAAAACCCCGACCGCCCGCTGTGGAAAATTCCCTGAACCCAAATGTGACAGACGGCCTTGAGAGATGGAAGCgtggggagagaaggaggggctGGTTGTGAAAAAAAGCAAGCCTACTGTGTGTGACACATGACATTCAAAGACAGAGAAtaggagaagaaaaaaggagaatgCCACAGCCAGGATAAAGGAAAGACATGGGAAGAATGGAAACTACATATTGCTGGTTTTGTCTCTACTGTTCCATAGTCTACTTTGTTTCTCATAAGACCAATAAAAGACCTTTTAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636850.1 True 1118 lncRNA 0.42 2 17518771 17521010

Neighbor

gene id symbol gene type direction distance location
myb myb coding downstream 43875 17465918 ~ 17474896 (-)
armc1l LOC103368599,LOC104950028,LOC108242485 coding downstream 140143 17375197 ~ 17378628 (-)
iyd iyd coding downstream 208324 17307112 ~ 17310447 (-)
sec63 sec63 coding downstream 212545 17291166 ~ 17306226 (-)
scml4 LOC100701983,LOC102215682,LOC101464936,LOC102300852,LOC104950495 coding downstream 231130 17269861 ~ 17287641 (-)
LOC120546939 NA coding upstream 135644 17656654 ~ 17657876 (-)
LOC120547287 NA coding upstream 176428 17697438 ~ 17701407 (-)
rps12 rps12 coding upstream 239860 17760870 ~ 17763808 (-)
LOC120547356 NA coding upstream 240946 17761956 ~ 17762038 (-)
LOC120547359 NA coding upstream 241388 17762398 ~ 17762482 (-)
G185035 NA non-coding downstream 85807 17426204 ~ 17432964 (-)
G185054 NA non-coding downstream 119320 17396471 ~ 17399451 (-)
G185039 map7,LOC107374525 non-coding downstream 155868 17362009 ~ 17362903 (-)
G185031 ppp1r14c non-coding downstream 185798 17312485 ~ 17332973 (-)
G184989 NA non-coding downstream 348509 17169689 ~ 17170262 (-)
G185094 NA non-coding upstream 4508 17525518 ~ 17527365 (-)
G185123 sgk1 non-coding upstream 44659 17565669 ~ 17578288 (-)
G185124 NA non-coding upstream 65241 17586251 ~ 17586492 (-)
G185125 sgk1 non-coding upstream 72356 17593366 ~ 17595997 (-)
G185200 NA non-coding upstream 166866 17687876 ~ 17691442 (-)
LOC120547341 NA other downstream 249137 17266359 ~ 17269634 (-)
gpatch2 gpatch2,LOC102785715 other downstream 682788 16825652 ~ 16835983 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other downstream 1000897 16490650 ~ 16517874 (-)
LOC120546332 akap7 other downstream 1330441 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 1450462 16065854 ~ 16068309 (-)
tbpl1 tbpl1 other upstream 102114 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 243795 17764805 ~ 17766910 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other upstream 390260 17911270 ~ 17913036 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 968805 18489815 ~ 18506198 (-)
LOC120546357 LOC106525279 other upstream 1119411 18640421 ~ 18647401 (-)

Expression


Co-expression Network