LOC120546341


Basic Information

Item Value
gene id LOC120546341
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15696500 ~ 15700999 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636867.1
AGGTAAATGCTATATAATTAAAACATCCGTCGGAAGGCCTCAAGATGTGGCTGACAGCTGTGGCAAAAGCTaCGCAGGGTTGCACAACAAAATGCAAGTCATAGTCCCTTTATGCTacacaagaaaagaaaagaaatgtatgGTGGAGTACAGAGGAGTTGAGGAGTCTTACAGTCTGAGGAAAGAAGCTGCTCTGTGGACTGGTGGTACGACAGCAGACTTCTGTATCGCTTGTTGGATGGCTGCAGGGTGATCAGGCTGTTGCTGGGATGGACCCAGGAGAATACTGGGACGCCTAATCTGCTGCTCTACATGCACAACTGCAGACACAAAACACCCATACCTACATCCTCGACAGCCTAATCTGTTTAAGCAGAATACAGCAGCTTAAAAAGCCTTTTTCCCCAAGTGCTGGGTGTACAGTAGGATCTTTTTTGGATGTCAACAAAGAGCACTACAAAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636867.1 True 465 lncRNA 0.46 3 15696500 15700999

Neighbor

gene id symbol gene type direction distance location
wdr21 dcaf4 coding downstream 1879 15688518 ~ 15694621 (-)
pigh pigh,LOC102778419 coding downstream 16248 15677870 ~ 15680252 (-)
vps18 vps18 coding downstream 37009 15653902 ~ 15659491 (-)
ino80 ino80 coding downstream 44205 15606068 ~ 15652295 (-)
syndig1l LOC108231752,LOC106536771 coding downstream 311913 15347760 ~ 15384587 (-)
LOC120546258 NA coding upstream 19430 15720429 ~ 15723341 (-)
chga NA coding upstream 76424 15777423 ~ 15785606 (-)
sel1l sel1l coding upstream 94772 15795771 ~ 15806849 (-)
arhgap18 arhgap18 coding upstream 107084 15808083 ~ 15830786 (-)
fkbp6 fkbp6 coding upstream 130780 15831779 ~ 15839516 (-)
G184452 LOC103369942,LOC106518591 non-coding downstream 407615 15283249 ~ 15288885 (-)
G184420 NA non-coding downstream 522381 15173711 ~ 15174119 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding downstream 522860 15169136 ~ 15173640 (-)
G184404 LOC103369948,LOC101169258 non-coding downstream 557785 15132217 ~ 15138715 (-)
G184406 LOC107378075,LOC100701982,LOC107704376,LOC101474541 non-coding downstream 558187 15135469 ~ 15138313 (-)
G184662 stx7 non-coding upstream 33419 15734418 ~ 15735282 (-)
G184668 ctgf non-coding upstream 71687 15772686 ~ 15775486 (-)
G184696 NA non-coding upstream 311501 16012500 ~ 16015535 (-)
G184699 LOC107390449 non-coding upstream 324219 16025218 ~ 16033730 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding upstream 336751 16037750 ~ 16042215 (-)
rps29 NA other downstream 585021 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1028899 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1083554 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1198130 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 2205357 13473683 ~ 13491143 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 87827 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 364855 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 445591 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 789651 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1124653 16825652 ~ 16835983 (-)

Expression


Co-expression Network