LOC120546799


Basic Information

Item Value
gene id LOC120546799
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7328374 ~ 7331535 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636942.1
ttggagacattaccttatttaatcattaaattaataggTCATGAGAATAAATGATGTTTCTCTGCCTTCAATGGCTCAAGAAGGCAATCGGCTCCAGAAAAAAACCCTGGGGAATTTGAATTTGGGAGAAATTGGCGAAAGAAAATTGCGTTCACAACCAGGTATTCCTCTGCAGAGCCTTATCAATGGGCTTTGGAGGGTTGTAGCTTGCGTTCACAGCTACAGGAAATGTCTTTCGAAGAGTAAGGTCACTGAGTGGTGGGTGCTATTTTGATCTAGTGATTGAAATTATTGTTTATTCTTTATGTAACCTCTTTCTAGAAATCCCTCAAATGAAAAGTGACCTCACCATTATTGCTCAAAAGACTGGAAGGACTCCTATGGAGGATCTAGATTCCTCCTTCTCGACTTTTGGAGAAGTGCAACCGACTCCAGAGAGGAGACCGAGCCCAGAGGAGACCGAGCCCTTTAAAGAGAGTCCCATGGTGACTGAGCGCTTTCGAGAGACACCACAGACTGCAGCAACAGCTGAGACCTCAGCGAAAACACAGATTGAAGTTAAAAAGGTCTCTGGGGTGTTTTGCCAGGCAGAAGCGTGGAAAGCAGCCCGCCTTGCCACCTCTGCTACTGCCATGGTGTGGAATCTGCTGCTGGGCACCTTTTTGATTTGGAGAAAAGCAACCTGAATGGTGGGAAGCCAACCAGAGGGGATGGGGAGCAGCTGTTCGCCCTTGACCAAATTAAAAAGGCAGCCATTATTGCCACATTTCTGGGGTATTGCGCTGTAAGATGCTACATTGAAGAAGTGGCCGGCAGCCAGCCGAGGGCAGATAGACACATCTATCAATTCGAAGCTC
>XR_005636943.1
ttggagacattaccttatttaatcattaaattaataggTCATGAGAATAAATGATGTTTCTCTGCCTTCAATGGCTCAAGAAGGCAATCGGCTCCAGAAAAAAACCCTGGGGAATTTGAATTTGGGAGAAATTGGCGAAAGAAAATTGCGTTCACAACCAGGTATTCCTCTGCAGAGCCTTATCAATGGGCTTTGGAGGGTTGTAGCTTGCGTTCACAGCTACAGGAAATGTCTTTCGAAGAGTAAGGTCACTGAGTGGTGGGTGCTATTTTGATCTAGTGATTGAAATTATTGTTTATTCTTTATGTAACCTCTTTCTAGAAATCCCTCAAATGAAAAGTGACCTCACCATTATTGCTCAAAAGACTGGAAGGACTCCTATGGAGGATCTAGATTCCTCCTTCTCGACTTTTGGAGAAGTGCAACCGACTCCAGAGAGGAGACCGAGCCCAGAGGAGACCGAGCCCTTTAAAGAGAGTCCCATGGTGACTGAGCGCTTTCGAGAGACACCACAGACTGCAGCAACAGCTGAGACCTCAGCGAAAACACAGATTGAAGTTAAAAAGGTCTCTGGGGTGTTTTGCCAGGCAGAAGCGTGGAAAGCAGCCCGCCTTGCCACCTCTGCTACTGCCATGGTGTGGAATCTGCTGCTGGGCACCTTTTTGATTTGGAGAAAAGCAACCTGAATGGTGGGAAGCCAACCAGAGGGGATGGGGAGCAGCTGTTCGCCCTTGACCAAATTAAAAAGGCAGCCATTATTGATGCTACATTGAAGAAGTGGCCGGCAGCCAGCCGAGGGCAGATAGACACATCTATCAATTCGAAGCTCAcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636942.1 True 857 lncRNA 0.46 8 7328378 7331535
XR_005636943.1 False 833 lncRNA 0.46 7 7328374 7331535

Neighbor

gene id symbol gene type direction distance location
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 527581 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 863572 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 1255154 6070546 ~ 6073220 (-)
gopc gopc coding downstream 1318934 5986437 ~ 6009440 (-)
lrfn2b LOC103354004,LOC104943823 coding downstream 1740137 5389153 ~ 5588237 (-)
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding upstream 113326 7444861 ~ 7588065 (-)
LOC120546734 cd2ap coding upstream 920181 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 1217644 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 1226934 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 1233608 8565143 ~ 8566141 (-)
G182850 NA non-coding downstream 271155 7057006 ~ 7057219 (-)
G182848 NA non-coding downstream 284290 7043716 ~ 7044084 (-)
trnak-uuu_21 NA non-coding downstream 294972 7033330 ~ 7033402 (-)
trnak-uuu_20 NA non-coding downstream 296651 7031647 ~ 7031723 (-)
trnak-uuu_19 NA non-coding downstream 298328 7029974 ~ 7030046 (-)
G182913 NA non-coding upstream 11609 7343144 ~ 7344677 (-)
LOC120546796 NA non-coding upstream 18247 7349782 ~ 7386287 (-)
G182916 NA non-coding upstream 19473 7351008 ~ 7357827 (-)
G182957 NA non-coding upstream 505058 7836593 ~ 7836797 (-)
G182958 NA non-coding upstream 505987 7837522 ~ 7837735 (-)
G182764 NA other downstream 627257 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 1059231 6232742 ~ 6269143 (-)
G182502 NA other downstream 1416465 5911312 ~ 5911909 (-)
G182474 NA other downstream 1535436 5790289 ~ 5792938 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 2014659 5311506 ~ 5313715 (-)
G182952 NA other upstream 430030 7761565 ~ 7766386 (-)
G182977 NA other upstream 693180 8024715 ~ 8025044 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 717923 8049458 ~ 8126664 (-)
LOC120546397 NA other upstream 1449793 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 1689425 9020960 ~ 9024565 (-)

Expression


Co-expression Network