LOC120546800


Basic Information

Item Value
gene id LOC120546800
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6939952 ~ 6940460 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636944.1
ACAGACcgctaaaattaattaattaaatacataGTGACAACTTCCATTTTTATAAAGGTACAGGAAATATGGTATGGTTTATGGAACAAATATGAGGAAATATTTGTGAAAGTCTGAGTTTGGCAACTCCACCCGTGTCCTGACGAGGAGCGGTTTTGGCTGGGTTGAAACACCCGAGAATTGAGacatcttaaaaacaaaaaggttaagTTAAGGTTAATAAGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAG
>XR_005636945.1
ACAGACcgctaaaattaattaattaaatacataGTGACAACTTCCATTTTTATAAAGGTACAGGAAATATGGTATGGTTTATGGAACAAATATGAGGAAATATTTGTGAAAGTCTGAGTTTGGCAACTCCACCCGTGTCCTGACGAGGAGCGGTTTTGGCTGGGTTGAAACACCCGAGAATTGAGacatcttaaaaacaaaaaggttaagTTAAGGTTAATAAGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCTGGGGTAAGTCCTCCACAGTAGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636944.1 False 356 lncRNA 0.42 3 6939987 6940460
XR_005636945.1 True 357 lncRNA 0.42 3 6939952 6940460

Neighbor

gene id symbol gene type direction distance location
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 139159 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 475150 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 866732 6070546 ~ 6073220 (-)
gopc gopc coding downstream 930512 5986437 ~ 6009440 (-)
lrfn2b LOC103354004,LOC104943823 coding downstream 1351715 5389153 ~ 5588237 (-)
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding upstream 504401 7444861 ~ 7588065 (-)
LOC120546734 cd2ap coding upstream 1311256 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 1608719 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 1618009 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 1624683 8565143 ~ 8566141 (-)
G182828 NA non-coding downstream 5929 6927060 ~ 6934023 (-)
LOC120546804 LOC108249206,LOC108241867,LOC103144399,LOC106919223,LOC106960717,LOC106511603 non-coding downstream 68708 6868475 ~ 6871244 (-)
G182789 NA non-coding downstream 183120 6756575 ~ 6756832 (-)
LOC120546805 NA non-coding downstream 207240 6732157 ~ 6732712 (-)
G182775 NA non-coding downstream 222879 6716745 ~ 6717073 (-)
trnak-uuu_18 NA non-coding upstream 86682 7027142 ~ 7027214 (-)
trnak-uuu_19 NA non-coding upstream 89514 7029974 ~ 7030046 (-)
trnak-uuu_20 NA non-coding upstream 91187 7031647 ~ 7031723 (-)
trnak-uuu_21 NA non-coding upstream 92870 7033330 ~ 7033402 (-)
G182848 NA non-coding upstream 103256 7043716 ~ 7044084 (-)
G182764 NA other downstream 238835 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 670809 6232742 ~ 6269143 (-)
G182502 NA other downstream 1028043 5911312 ~ 5911909 (-)
G182474 NA other downstream 1147014 5790289 ~ 5792938 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 1626237 5311506 ~ 5313715 (-)
G182952 NA other upstream 821105 7761565 ~ 7766386 (-)
G182977 NA other upstream 1084255 8024715 ~ 8025044 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 1108998 8049458 ~ 8126664 (-)
LOC120546397 NA other upstream 1840868 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 2080500 9020960 ~ 9024565 (-)

Expression


Co-expression Network