LOC120547022


Basic Information

Item Value
gene id LOC120547022
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 5112241 ~ 5113721 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637016.1
TGCACCGCTTTACTTTCCTGCCATGTTTGAGGCACCATCATAACTCTGCCCACGTAAAGCAGACATGGGCACATCAGTTACCGTCTTGGCAAGGCTCTGGCCTGTTGTCTctgatatactgtacaaccCAATAAACTACTCATGTGGGACAAGGTCATGGTCCACATAGCGCAAACAAACACTTGCCTGCTCAACACCAGAAATATCATACGTACCATCCACTATCACAGAAATCTGAACAAGGGCTGGAGACCTTATGTCACTGGCAATGCCTCTGATTATCGTATTGGCCATAATGCTCAGGATTTCATTCTGTGGTTTAGGGCTTGTGTAtgcagtaaataaaataaaaataaaatgggatCATCCTTTTCTGCCCTAAGTTTCAGGAGCTGATACAGATTACCACTTTCTTGTGGCCTCTTAAAGATTGTCCCTTTTCCCTCAAGCATTGCCTTGCCACCTATTGCTGTTTACCCCATACACTTGATAACTGGGAACTGACTGAGGTTGACTGATGTGCACTCACAGTCACATGAGGTCGATGGTCTTGGGAGGTCTGGTGTGCttttttccagtttctaaagCCTGTACTGATGAAAGCAGCATCAGGTCTATGACGTAAACAGGACTGGTTTAACATACCTTTGCTGCAGTAAAAACACAAGACCTCTTTGGCTGATGGGCTGTAATGTAGCCATGGAAAGTCTTGTTACCATTTATCTTGAAATGCTAAGGATTTGTTTGCAAGTATATGTTTATCAATACACTGGGTATGTGGTTGGTATGGCTTTGTGCAGTCACTGAGATCTGAACTAAAAACGGTGCTCCTGTTCCCTGTGCTGGTGCTAGCAATATCATATAATATCATGATCTTTCTGGATCTGTCCCTGGTTCTGACCTTTCCTCTACTCTCACTGTCTCAGAAAAGTCTGACTCctggaaaggaaaaaaatatgttttccatACTTGTAGTAACTACCTCATCCAACCAAATAGCAAGACTTCTTGTCATGGTGCTGTCTgttttccctctcccctctcccttgtttttttgtctgtcatGTGCTGAGTGGGTGTGGCGCTCctggctctctctccctcctcgtcAAGACACCTGTGGCTTCCTGTTCACCTGATTCACATCCAGCAATCACCACTCCTGTTTTAAAACCCCAGCCTTCCAACTAGTCTCTGCCAGATCGTCCGTTCACTCAAGTGATTCCCACTACAGCCCTGGAAGCCCAGTCTGCCTACCTGAGCCTCGTTCTTCTCTCGATCCTGCTTCTCACCTGTCTGCCCGCTCTCAGCCCCAGGGGATATCCAGCACCTGCATCActcattttttttgttcaataaaCCTCAATACCTGTTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637016.1 True 1378 lncRNA 0.45 2 5112241 5113721

Neighbor

gene id symbol gene type direction distance location
LOC120546227 htr1e coding downstream 198050 4871142 ~ 4914191 (-)
znf292b NA coding downstream 259158 4819147 ~ 4853083 (-)
cenpe cenpe coding downstream 327923 4743144 ~ 4784318 (-)
rad51 rad51 coding downstream 370596 4731388 ~ 4741645 (-)
si:ch211-241j12.4 LOC103354013 coding downstream 409517 4685533 ~ 4702724 (-)
LOC120546193 NA coding upstream 1458 5115179 ~ 5123781 (-)
LOC120547277 NA coding upstream 134224 5247945 ~ 5253700 (-)
LOC120547345 NA coding upstream 145744 5259465 ~ 5279720 (-)
lrfn2b LOC103354004,LOC104943823 coding upstream 275432 5389153 ~ 5588237 (-)
gopc gopc coding upstream 872716 5986437 ~ 6009440 (-)
G182348 NA non-coding downstream 11789 5100188 ~ 5100452 (-)
G182329 NA non-coding downstream 136305 4975564 ~ 4975936 (-)
G182325 NA non-coding downstream 197540 4914484 ~ 4914701 (-)
G182317 NA non-coding downstream 293279 4818699 ~ 4818962 (-)
G182302 NA non-coding downstream 302661 4809078 ~ 4809580 (-)
G182356 NA non-coding upstream 12092 5125813 ~ 5126021 (-)
G182358 NA non-coding upstream 31791 5145512 ~ 5145720 (-)
G182367 NA non-coding upstream 112672 5226393 ~ 5226670 (-)
G182368 NA non-coding upstream 122112 5235833 ~ 5236208 (-)
G182413 NA non-coding upstream 273086 5386807 ~ 5388183 (-)
smim8 smim8 other downstream 308749 4745773 ~ 4803492 (-)
G182121 NA other downstream 946245 4163358 ~ 4165996 (-)
trnav-aac_21 NA other downstream 956409 4155760 ~ 4155832 (-)
trnav-aac_20 NA other downstream 963263 4148907 ~ 4148978 (-)
G182102 NA other downstream 1011761 4100010 ~ 4100480 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other upstream 197785 5311506 ~ 5313715 (-)
G182474 NA other upstream 676568 5790289 ~ 5792938 (-)
G182502 NA other upstream 797591 5911312 ~ 5911909 (-)
cgrrf1 NA other upstream 1119021 6232742 ~ 6269143 (-)
G182764 NA other upstream 1586770 6700491 ~ 6701117 (-)

Expression


Co-expression Network