LOC120547176


Basic Information

Item Value
gene id LOC120547176
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13952385 ~ 13988656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637034.1
TCTGGAGGCTTCAGCAGGGACAGTTCCTCTGATCGTCTGATGTCTGAGATGGAGCCAACACGAGACGGTGTGGGGGATCAGGGAGAATATGGAAGCAAGGCACTTGGTCATTATGAGATGAACCCATGTGTGAAGCCTGCCACCCCCTGGTTTCAATTGGGACCCATGCCAGAGTCTGCTGCAGAGAAACAGCCCTAGAATGGGTCCTGTATGCAGAGGATGTTGGGTGATCTGGCCACGTGCACGGAATTGTTAGATGCTATCCAGCCACGGCCTGTGCTACAGAGCGACATGGAGGAAACAACCCTTATCACTTGGCCTTGAAGTCGCTGTGACTGATCTCACAGATTTATACATGCTTTCTCCTCGCTTGATCAGTCTTTTCATGTCATTCCAATTCACAGCAGTGTATCAATATATCAGTGGCAGATTTTGGCTGCACATGTTGCTGTCTCATATCTACAATAATGTGTGAGAAAGTCTCAAGAGAAACCCCACTAATTGCCGAAGACGGACATATTCTTTCACTTAGTTTCAGGACACGCCACATTTTGAAACTGCTCGCAAAATCATCTCTAAGATGCCGCTTTAGTCTGATACAAATTATGTATATGCTCTTTTTCTTAATGTACGTCGAATATAATTCATGTATGTACCTGCTGTATTTGTACAGGGGTGAGAGAGACTTTGCTGCATTGTTTTTTAGCCTGTGGGGTGTA
>XR_005637035.1
CCCGTGCACAGGTAGAGAGAGGAGGTGGAACCGTTAGAGGAAGTCGGTAACGTTACGCTACAGGTAACGCTTCAAAGCAAAGGCACTTGGTCATTATGAGATGAACCCATGTGTGAAGCCTGCCACCCCCTGGTTTCAATTGGGACCCATGCCAGAGTCTGCTGCAGAGAAACAGCCCTAGAATGGGTCCTGTATGCAGAGGATGTTGGGTGATCTGGCCACGTGCACGGAATTGTTAGATGCTATCCAGCCACGGCCTGTGCTACAGAGCGACATGGAGGAAACAACCCTTATCACTTGGCCTTGAAGTCGCTGTGACTGATCTCACAGATTTATACATGCTTTCTCCTCGCTTGATCAGTCTTTTCATGTCATTCCAATTCACAGCAGTGTATCAATATATCAGTGGCAGATTTTGGCTGCACATGTTGCTGTCTCATATCTACAATAATGTGTGAGAAAGTCTCAAGAGAAACCCCACTAATTGCCGAAGACGGACATATTCTTTCACTTAGTTTCAGGACACGCCACATTTTGAAACTGCTCGCAAAATCATCTCTAAGATGCCGCTTTAGTCTGATACAAATTATGTATATGCTCTTTTTCTTAATGTACGTCGAATATAATTCATGTATGTACCTGCTGTATTTGTACAGGGGTGAGAGAGACTTTGCTGCATTGTTTTTTAGCCTGTGGGGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637034.1 True 719 lncRNA 0.46 5 13952385 13988656
XR_005637035.1 False 702 lncRNA 0.45 5 13956925 13988656

Neighbor

gene id symbol gene type direction distance location
chgb chgb coding upstream 13826 13933833 ~ 13938559 (+)
gzf1 gzf1 coding upstream 76750 13870887 ~ 13875635 (+)
atad2b atad2b coding upstream 374969 13502644 ~ 13577416 (+)
opn8b NA coding upstream 520614 13421308 ~ 13431771 (+)
opn8a NA coding upstream 539573 13388815 ~ 13412812 (+)
LOC120547093 tpd52l1 coding downstream 825 13989481 ~ 13990079 (+)
LOC120546405 plcb4 coding downstream 155929 14144585 ~ 14229227 (+)
LOC120546497 NA coding downstream 243622 14232278 ~ 14234991 (+)
lamp5 lamp5 coding downstream 246623 14235279 ~ 14240598 (+)
LOC120547018 LOC100697584,LOC101486653,LOC103373760 coding downstream 340962 14329618 ~ 14335642 (+)
G184128 NA non-coding upstream 61469 13889301 ~ 13890916 (+)
G184085 fkbp1b,LOC102794993 non-coding upstream 484298 13458602 ~ 13468087 (+)
G184078 mut non-coding upstream 503286 13443043 ~ 13449099 (+)
G184075 NA non-coding upstream 517881 13434212 ~ 13434504 (+)
G184074 NA non-coding upstream 518179 13433985 ~ 13434206 (+)
G184235 NA non-coding downstream 381468 14370124 ~ 14370768 (+)
G184249 LOC101061969 non-coding downstream 487968 14476624 ~ 14565127 (+)
G184263 NA non-coding downstream 569886 14558542 ~ 14606665 (+)
G184339 NA non-coding downstream 666978 14655634 ~ 14656247 (+)
G184341 NA non-coding downstream 671663 14660319 ~ 14660735 (+)
LOC120546706 wdcp other upstream 478226 13468235 ~ 13474159 (+)
G183994 phip other upstream 704969 13145475 ~ 13247416 (+)
LOC120546167 NA other upstream 943974 12946999 ~ 13008411 (+)
bcl11bb LOC103368061 other upstream 1213001 12707218 ~ 12739384 (+)
ches1 foxn3 other upstream 2083193 11764143 ~ 11869192 (+)
LOC120546742 plcb1 other downstream 35828 14024484 ~ 14140769 (+)
G184231 NA other downstream 373685 14362341 ~ 14381187 (+)
LOC120546619 LOC103359912,LOC102080314 other downstream 404784 14393440 ~ 14424864 (+)
G184258 NA other downstream 536480 14525136 ~ 14529370 (+)
hsp90aa1.1 LOC103369948 other downstream 1140820 15129476 ~ 15134860 (+)

Expression


Co-expression Network