XLOC_004937


Basic Information

Item Value
gene id XLOC_004937
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 41580801 ~ 41582798 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011016
tgagGACATGCAAACCAtgcacaaaaatgaaaaacagacaaacaaaaaaatatttacagaatgaACACAAGAAGGTAGAAAAGACAATCCGCTGATGGCTTTCAGCTTCACTGACCTTCACCTTTAGCTGGGAAATATCGCACCAAAAATTACATCTAAATGGAGATTTCCAGCAAATACAGATTAAGACTACAAAAATGAATTCCAGGAATAGAAAtctcaaaagaattaaaaatgttcatctggGTTCAAAAAGTGACCTTTCCTCACAGTAACACACTGGCTGTGTTGAATCTATAGAttgagagcaccaaatatgtcttAGAAACATACAAAAGAATGATTTCTGATGGCTGTATTTGAGTCTGTAAATGGTGAATGCTGTAAAGCAGAAGTCTACAatccaatgtgtttttttttgcacTATTCTCAGATACAACATAGACAAACCTTGGGATAGCAGTTACTTTAATAAAATATCTTAGCACTAAGACCATCAGTAGGTAGTTcatctttttttcatcatttaaagcACAAACAGTGATGAAGTGCAGCTCTTAAAGGTAAAGTGCACCATTTCTGCATCATTATTAGTGCAGGAAAAACAGTTGCCCTTTAAATGTCTGGTCACAAGAGGAAAGCACTGGTTCAAAGGCAGAACTAGTATGAATGGAAGCTTATTTCCACCACAGAACAAACtaaatctcacaattctgacttttttccacttttgtaattgtgtctttttaaataattttggcaTGATTTAGGAGTATTTCATCTCATAATTCAGATTAGGAGAAACTCGAGTTTTCAtaaaacaattctgactttttctttGGAATTCTGACTGTTTCTTTCTAAGAATTGTAACATTTAATCTCACAGTTCTGacctttttttagattttagtttttCTATCTCATAATTCAAAATTTTATCTGGAAGTCAATTCATAATTCTGACATTTTCAAATGTGGATATTCAGAGATCTCATTATTCAGATTTTAAATCTCATAATATCTTATTCAGATTTTGTTCTGTTGAATTCAGTGttatctcataattctgactttgtttccaatgaaaaaaaatgaattgtgAGATAAAATCTTTGAAATACacagaaaaaagtcagaattatgagattaAAAACCTctgaaattcacaaaaaaaaaatcagaattatgagataaaaactgaattttacagtaaaaatctaatctaatattcacagacaaaaaaagtcagaattatgagataaaaactctaaattccactttaaaagtctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTCTGAATTATGGGATAAAAACTCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACtttttaaagtctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACtttttaaagtctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactcttaaattcactgaataaaagtcagaattataagactAAATATCTGAAATCCACaagaaaaaatctgaattatgaGATAAACTCAATTccacaagaaaaaaattaaatgagattAAAAAATAGGAATTCaaagaaacattttaatttattttttagattcagattaaaaataattttttttccaccTGTGCAATTTAGAGTTCTAATgtcacaattcagacttttttaGTAAAATTATAATCTTGATCTTTTTTGAGAACTTTGAG
>TCONS_00011017
TAAGACTACAAAAATGAATTCCAGGAATAGAAAtctcaaaagaattaaaaatgttcatctggGTTCAAAAAGTGACCTTTCCTCACAGTAACACACTGGCTGTGTTGAATCTATAGAttgagagcaccaaatatgtcttAGAAACATACAAAAGAATGATTTCTGATGGCTGTATTTGAGTCTGTAAATGGTGAATGCTGTAAAGCAGAAGTCTACAatccaatgttttttCTATCTCATAATTCAAAATTTTATCTGGAAGTCAATTCATAATTCTGACATTTTCAAATGTGGATATTCAGAGATCTCATTATTCAGATTTTAAATCTCATAATATCTTATTCAGATTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011016 False 1906 lncRNA 0.29 2 41580801 41582798
TCONS_00011017 True 351 lncRNA 0.30 2 41580985 41581837

Neighbor

gene id symbol gene type direction distance location
XLOC_004936 kif5ba coding upstream 29202 41510492 ~ 41551599 (+)
XLOC_004934 epc1a coding upstream 111875 41420355 ~ 41468926 (+)
XLOC_004935 FP236323.1 coding upstream 120167 41460518 ~ 41460634 (+)
XLOC_004933 NA coding upstream 165516 41413512 ~ 41415285 (+)
XLOC_004932 si:ch211-27e6.1 coding upstream 210935 41348969 ~ 41369866 (+)
XLOC_004938 bnip3 coding downstream 114866 41697664 ~ 41705910 (+)
XLOC_004939 NA coding downstream 374140 41956938 ~ 41959729 (+)
XLOC_004940 TCERG1L coding downstream 408837 41991635 ~ 42199254 (+)
XLOC_004941 NA coding downstream 817451 42400249 ~ 42407668 (+)
XLOC_004942 ebf3a coding downstream 853530 42436328 ~ 42579702 (+)
XLOC_004931 NA non-coding upstream 286638 41248760 ~ 41294163 (+)
XLOC_004930 NA non-coding upstream 337519 41156859 ~ 41243282 (+)
XLOC_004929 NA non-coding upstream 466723 40684766 ~ 41114078 (+)
XLOC_004943 NA non-coding downstream 878327 42461125 ~ 42464230 (+)
XLOC_004944 NA non-coding downstream 1181110 42763908 ~ 42781488 (+)
XLOC_004945 CABZ01077176.1 non-coding downstream 1220190 42802988 ~ 42874746 (+)

Expression


Co-expression Network