XLOC_004942 (ebf3a)


Basic Information

Item Value
gene id XLOC_004942
gene name ebf3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 42436328 ~ 42579702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009694
CAGTCCTGGGGGATAGAGGGTTGAGTTTTGTATGCTTCCATCCATTCTGCAAAGACGCGCTAAAGGCCCCTCATCATCCTCTCCCGTGTCCGGGAACACCTCCACGGTGATCATTTACGCGTTTATTTGTCTTTTGGAGCCAGAAGTGGTGGATTCAGCAGTGTCCCGAAGCCTTTTTTGATGCTGTTGTTATAGGATGCCACCAAGCTAAGagcatcatcaccatcatcatcatcatcatcaacaacaacaacaacaagcgaAAGTTGCAAGAAATGTTTAACTGAATTAAAACAAGTCGAATATCCCGGCTATTTGCGCGACTTGTTCCACGGGAGGATCTCTCATCTATCCAAACAAGCTGCTGGAGAGGCTTGAGAATCTTTTACGCGCTGAATCGTTCATGTGGTGCCAACGCAGGACGGACTGAAGAAGGAGTCGGGActgcttttttttctcttctcttcttttcgACAAATCCCAAACAAACTCTCACGGCTATCCGAAGGGGCTCTCGGAGAAACGACGCGCCCTCGCTCACACTCTCATTTCATCTCTTTGGCTGGAAGTGGGTTGCACGCGAACTGTTTTAATGTTTGGTATTCAGGAAAATATACCGAGAGGGGGAACCACTATGAAAGAGGAACCGCTGGGCAGTGGCATGAATCCGGTCCGATCGTGGATGCACACGGCTGGGGTGGTGGATGCGCACACGGCCGCCCAGAGTGGAGTTGGTCTGGCACGGGCGCACTATGAGAAACAACCGCCATCCAACCTCAGAAAATCCAATTTTTTCCACTTCGTCCTGGCGCTTTATGACAGACAGGGACAGCCAGTGGAGATCGAAAGGACAGCTTTTGTGGACTTTGTGGAAAAGGAGAAAGAACCTAACAGTGAAAAAACTAACAATGGgatacattacaaactacaactATTGTACAGCAACGGCGTCAGAACAGAACAGGATCTTTATGTACGGTTAATTGATTCCATGACAAAACAGGCTATTATTTATGAAGGACAAGACAAAAACCCAGAAATGTGCCGAGTTCTTCTCACACACGAAATTATGTGCAGTCGGTGTTGTGACAAAAAAAGCTGTGGAAACAGGAACGAGACGCCCTCAGACCCCGTGATCATCGACAGATTCTTTTTGAAATTCTTCCTTAAGTGTAATCAGAACTGCCTGAAGAATGCAGGAAACCCACGGGACATGCGCAGATTCCAGGTCGTTGTATCGACAACAGTCAATGTGGACGGTCATGTGTTGGCCGTGTCGGACAACATGTTTGTCCACAACAACTCAAAACACGGCAGAAGAGCCCGCCGTCTTGACCCCTCAGAAGCAGCTACCCCGTGCATAAAGGCGATCAGCCCGAGTGAAGGCTGGACCACAGGAGGAGCCACGGTCATCATCATTGGCGACAACTTCTTCGATGGACTGCAGGTCGTGTTTGGCACCATGCTAGTATGGAGTGAGCTCATTACACCCCATGCCATCCGAGTGCAGACCCCTCCGAGACACATCCCGGGCGTTGTAGAAGTCACCCTGTCCTACAAGTCTAAGCAATTCTGCAAAGGTGCACCGGGCCGATTTGTGTACACAGCACTGAACGAACCAACTATTGACTACGGCTTCCAGAGACTGCAGAAGGTCATTCCCAGACATCCAGGTGATCCGGAGAGGTTGCCCAAGGAGGTGTTGCTAAAGAGAGCCGCTGACCTTGTGGAAGCGCTGTACGGGATGCCACACAACAACCAGGAGATCATCCTGAAGAGGGCCGCAGATATCGCAGAGGCTTTATACAGTGTCCCACGTAACCACAACCAGATCCCGTCCCTTGCCAACACAGCCTCTCACGGTGGAATGATGGGAGTCAACTCATTCAGCAGTCAGCTTGCTGTCAATGTTTCAGAGACCTCACAAGTGGGCTACAGTCGCAACACGAGCAGTGTGTCACCTCGCGGTTACGTGCCTAGCAGCACCCCGCAGCAGTCCAACTACAACACTGTCAGCAACAGCATGAACGGCTACGGCAACACAGGGATGCCCAACTTGGGTGTACCTAGTTCACCGGGCTTCTTAAATGGCTCCTCTGCGAACTCTCCCTACGGCATGAAACAAAAAAGCGCCTTTGCTCCAGTTGTCAGGCCCCAAGCATCTCCACCTCCTTCTTGCACCAGTGCAAATGGCAATGGACTTCAAGcCATGTCCGGACTGGTGGTCCCCCCCATGTAAATTGCACTCCCTTCCATTGTAAAGCAGCAGTCTCTTCGCTGAGGACGAAGAGTAGTATGTTGTTGTATGGAGGATCTTCCTCGGAGCCGTCATTCGTCATGAAGTTAATCAGCAGCCACTTCTGTTGGAAAAAGACACTTGTTTTCAAAGTTTATTGGAAATCGAAACGCAAGCGACTTGGTCATGAACACTTTCATTTTATTGACTGAATCTCTTGTCATATTTTCACGATCtggaaaaagaaacaacaaaaaaaaaaaagaacaaaatgtaCCTATTTTGTATAAACATTTCTGGTTTAATCTTGGCTATGTTCTTGCTATGTGTGGGAAGAAACATTGTGGATATGCCATTTGATGAAAACActgataacagaaaaaaaaatgtgtaagaaTGTTTCTCTTTCACCGATGTGCTGCCGCCGCACATCTTCATAATGtgaattcattttccttttttgttatttttttttagttttgttttgttttttttgattgTGGTAATAAAAGGGGGCCAATATATACAGAGCCAATAAACTGGAAATAATATAAGATATATGATTTATAAATCAAAAAGAAAGGCAAGGAAGAACGAACGGAACGTTCAGTTCATTTGGCAGAAATGAACTTTGTAACTTATTGTAGGTAGAAATGTAACTTTGATATTGCGAAAATTCTTCTCTTGCCTTCAACAAGCACACTAACAGAGACGAATCGCTACTGTCTGTTggttaaaaaaaagaggaaaaaacgaacaaaaaaagaagacatttccACTGCTAAAGCTTCCTGTAAAGCGAGTGTGATCTGCAATGTTTTTCAACTTTTTGCTAGCACTGTATACTATTGCATTCTTAGGCTACTGTGAAGTCTGTTTCTTGTACCAGAAAGTTGTCCTTATACCTCTAGCTCCTTACTCCCTAATGTGTTTTGTATGTGGTTATACAATTGTAGACTTTTGTGATTTTGCCAAAGTTGTAGCTAAATATTTATACACTTGTCTTGAATTTTCCAGATTCACTTAAATATTTAGTACAGAGTTTTATTCCTACAGTTAGGAGTAAAATTGTCTTATACATTGCAACACTTTCACACAAACACTTGCGGTCACTAAGGGAATTTTTTGTAACATATCaattataaatattgtatttatctTTGAAATTGTCTTTGGAATTTTGTATATTGCTTTCCATCGGTTCGTTTGCGCTTTCGTTGATCTCACATGTAATTGTTTTGGATGGCCGAAATTACGATGAAGGTTTAGCCAAGAATTATCGCCTACATTCGATGTTTTGTACCGATAGATTGTATCGTCTGCGCATTTCATTtgtaattcagattttttttaaatgtcatcagACTTTccatttgattttgtttgtttgaggAGCAGTCAAATccattctttatttttatattcatttttaagtTATCTgaaaaaagtactttttttgaAAGAAAACTGTTTGTTGTAtagtcaaataaattgtttgtgtCACCTGGCTGTAATAATATTAGTAGATAAAGTGCATGTCAAGCCGCCCCGGGGGGGAAATCCAATTGTGGTTGTAAATTTTGTTTTTGTagaatgtaaagaaaaaaaaaaaaagaagtcatttttACCTGCCACCATGACTTTGCCACATAACTCAACCATGTTTACAGGGATcaagaatgaaaaaagaaaaggaaaaaaaatatctgCAATGGAAATATACATCAGtaactaatgtttattaaaatatgtcAGAAACAAAAGGCTTCCCGGTGAATCTCATGAGAGAAACCTTTCTGCTGTTTTAATGACGAACGTGCACCACAGTGAATCTCATTATTCCATTCAGATCAATGGTGTAAaaagcacaaacatttttttactaaaataaaaaataattattgtgacCCCTCATCTTTTTCAGACTATTTTGTCAGTTTGTCTTTAACATTAATTTCACCCTATTCCCTCGAGTCTAACAGCGTTCAAAgggaatgaaaacaaatgaaagttTAGTTTTTGTATCATATATGGACAACAAAGATGAAGATGTTCTATATTGTAAATCTCATTTTGTAAGTAATTCATGACACGGTAGCATAGCCAAAATCATTATCACCTACTTCTTCTTTCTCGATAATCTTTTGATTTTTTGAGTCGTGCCAAAATccgcaatttttttattttatgatttaatatatctatttttttttttttttttatcggagGCTTTCGTTTTTCTTTTGCACTTCAGGCTTTGTAAATGTTGTAATGTTCTTTCTGTTTCATACCAAAAGCGGATGTTTCCTCTTGGCAGTCGGCACACAAGTTTCCTTTAGCTGCAGGAAGCAAAGGCAGCtgtagaaagaaagaaatgatgaATGTACAATGTATTTGCTTTGTGATGGCTCAACAAAGCTCGGCCAAGTGGAGGAGCCCATGAGGTCACCCTGAAAGTAAGAAAAAGTCAAGGTTATGTGAAGCGCGCTTGCGGATTTCATCATTTCTGCGATCTGCTTTTGTCTTTTAGTCTAATTAAGTACCACACGACGAAGACTTCACCAAACACAAGCTCTGTAAAGAACAAATGCCTTTTTTTCTGGCTCATGTATGTTTCATTTGAGTTGTTTTATGGCCACATTTCTACATTTTATTGTACAAAGTTGTtcattttacataatatttaattaaagtattGTCTGTGA
>TCONS_00009695
ATGTTTGGTATTCAGGAAAATATACCGAGAGGGGGAACCACTATGAAAGAGGAACCGCTGGGCAGTGGCATGAATCCGGTCCGATCGTGGATGCACACGGCTGGGGTGGTGGATGCGCACACGGCCGCCCAGAGTGGAGTTGGTCTGGCACGGGCGCACTATGAGAAACAACCGCCATCCAACCTCAGAAAATCCAATTTTTTCCACTTCGTCCTGGCGCTTTATGACAGACAGGGACAGCCAGTGGAGATCGAAAGGACAGCTTTTGTGGACTTTGTGGAAAAGGAGAAAGAACCTAACAGTGAAAAAACTAACAATGGgatacattacaaactacaactATTGTACAGCAACGGCGTCAGAACAGAACAGGATCTTTATGTACGGTTAATTGATTCCATGACAAAACAGGCTATTATTTATGAAGGACAAGACAAAAACCCAGAAATGTGCCGAGTTCTTCTCACACACGAAATTATGTGCAGTCGGTGTTGTGACAAAAAAAGCTGTGGAAACAGGAACGAGACGCCCTCAGACCCCGTGATCATCGACAGATTCTTTTTGAAATTCTTCCTTAAGTGTAATCAGAACTGCCTGAAGAATGCAGGAAACCCACGGGACATGCGCAGATTCCAGGTCGTTGTATCGACAACAGTCAATGTGGACGGTCATGTGTTGGCCGTGTCGGACAACATGTTTGTCCACAACAACTCAAAACACGGCAGAAGAGCCCGCCGTCTTGACCCCTCAGAAGCAGCTACCCCGTGCATAAAGGCGATCAGCCCGAGTGAAGGCTGGACCACAGGAGGAGCCACGGTCATCATCATTGGCGACAACTTCTTCGATGGACTGCAGGTCGTGTTTGGCACCATGCTAGTATGGAGTGAGCTCATTACACCCCATGCCATCCGAGTGCAGACCCCTCCGAGACACATCCCGGGCGTTGTAGAAGTCACCCTGTCCTACAAGTCTAAGCAATTCTGCAAAGGTGCACCGGGCCGATTTGTGTACACAGCACTGAACGAACCAACTATTGACTACGGCTTCCAGAGACTGCAGAAGGTCATTCCCAGACATCCAGGTGATCCGGAGAGGTTGCCCAAGGAGGTGTTGCTAAAGAGAGCCGCTGACCTTGTGGAAGCGCTGTACGGGATGCCACACAACAACCAGGAGATCATCCTGAAGAGGGCCGCAGATATCGCAGAGGCTTTATACAGTGTCCCACGTAACCACAACCAGATCCCGTCCCTTGCCAACACAGCCTCTCACGGTGGAATGATGGGAGTCAACTCATTCAGCAGTCAGCTTGCTGTCAATGTTTCAGAGACCTCACAAGTGGGCTACAGTCGCAACACGAGCAGTGTGTCACCTCGCGGTTACGTGCCTAGCAGCACCCCGCAGCAGTCCAACTACAACACTGTCAGCAACAGCATGAACGGCTACGGCAACACAGGGATGCCCAACTTGGGTGTACCTAGTTCACCGGGCTTCTTAAATGGCTCCTCTGCGAACTCTCCCTACGGCATAGTTCCGTCGAGCCCTACCATGGCAGCCTCTTCGGTCAGCCTCTCTTCAAACTGTAGCAGTACACACGGCATTTTCTCATTCTCACCTGCCAATGTCATCTCTGCAGTGAAACAAAAAAGCGCCTTTGCTCCAGTTGTCAGGCCCCAAGCATCTCCACCTCCTTCTTGCACCAGTGCAAATGGCAATGGACTTCAAGcCATGTCCGGACTGGTGGTCCCCCCCATGTAAATTGCACTCCCTTCCATTGTAAAGCAGCAGTCTCTTCGCTGAGGACGAAGAGTAGTATGTTGTTGTATGGAGGATCTTCCTCGGAGCCGTCATTCGTCATGAAGTTAATCAGCAGCCACTTCTGTTGGAAAAAGACACTTGTTTTCAAAGTTTATTGGAAATCGAAACGCAAGCGACTTGGTCATGAACACTTTCATTTTATTGACTGAATCTCTTGTCATATTTTCACGATCtggaaaaagaaacaacaaaaaaaaaaaagaacaaaatgtaCCTATTTTGTATAAACATTTCTGGTTTAATCTTGGCTATGTTCTTGCTATGTGTGGGAAGAAACATTGTGGATATGCCATTTGATGAAAACActgataacagaaaaaaaaatgtgtaagaaTGTTTCTCTTTCACCGATGTGCTGCCGCCGCACATCTTCATAATGtgaattcattttccttttttgttatttttttttagttttgttttgttttttttgattgTGGTAATAAAAGGGGGCCAATATATACAGAGCCAATAAACTGGAAATAATATAAGATATATGATTTATAAATCAAAAAGAAAGGCAAGGAAGAACGAACGGAACGTTCAGTTCATTTGGCAGAAATGAACTTTGTAACTTATTGTAGGTAGAAATGTAACTTTGATATTGCGAAAATTCTTCTCTTGCCTTCAACAAGCACACTAACAGAGACGAATCGCTACTGTCTGTTggttaaaaaaaagaggaaaaaacgaacaaaaaaagaagacatttccACTGCTAAAGCTTCCTGTAAAGCGAGTGTGATCTGCAATGTTTTTCAACTTTTTGCTAGCACTGTATACTATTGCATTCTTAGGCTACTGTGAAGTCTGTTTCTTGTACCAGAAAGTTGTCCTTATACCTCTAGCTCCTTACTCCCTAATGTGTTTTGTATGTGGTTATACAATTGTAGACTTTTGTGATTTTGCCAAAGTTGTAGCTAAATATTTATACACTTGTCTTGAATTTTCCAGATTCACTTAAATATTTAGTACAGAGTTTTATTCCTACAGTTAGGAGTAAAATTGTCTTATACATTGCAACACTTTCACACAAACACTTGCGGTCACTAAGGGAATTTTTTGTAACATATCaattataaatattgtatttatctTTGAAATTGTCTTTGGAATTTTGTATATTGCTTTCCATCGGTTCGTTTGCGCTTTCGTTGATCTCACATGTAATTGTTTTGGATGGCCGAAATTACGATGAAGGTTTAGCCAAGAATTATCGCCTACATTCGATGTTTTGTACCGATAGATTGTATCGTCTGCGCATTTCATTtgtaattcagattttttttaaatgtcatcagACTTTccatttgattttgtttgtttgaggAGCAGTCAAATccattctttatttttatattcatttttaagtTATCTgaaaaaagtactttttttgaAAGAAAACTGTTTGTTGTAtagtcaaataaattgtttgtgtCACCTGGCTGTAATAATATTAGTAGATAAAGTGCATGTCAAGCCGCCCCGGGGGGGAAATCCAATTGTGGTTGTAAATTTTGTTTTTGTagaatgtaaagaaaaaaaaaaaaagaagtcatttttACCTGCCACCATGACTTTGCCACATAACTCAACCATGTTTACAGGGATcaagaatgaaaaaagaaaaggaaaaaaaatatctgCAATGGAAATATACATCAGtaactaatgtttattaaaatatgtcAGAAACAAAAGGCTTCCCGGTGAATCTCATGAGAGAAACCTTTCTGCTGTTTTAATGACGAACGTGCACCACAGTGAATCTCATTATTCCATTCAGATCAATGGTGTAAaaagcacaaacatttttttactaaaataaaaaataattattgtgacCCCTCATCTTTTTCAGACTATTTTGTCAGTTTGTCTTTAACATTAATTTCACCCTATTCCCTCGAGTCTAACAGCGTTCAAAgggaatgaaaacaaatgaaagttTAGTTTTTGTATCATATATGGACAACAAAGATGAAGATGTTCTATATTGTAAATCTCATTTTGTAAGTAATTCATGACACGGTAGCATAGCCAAAATCATTATCACCTACTTCTTCTTTCTCGATAATCTTTTGATTTTTTGAGTCGTGCCAAAATccgcaatttttttattttatgatttaatatatctatttttttttttttttttatcggagGCTTTCGTTTTTCTTTTGCACTTCAGGCTTTGTAAATGTTGTAATGTTCTTTCTGTTTCATACCAAAAGCGGATGTTTCCTCTTGGCAGTCGGCACACAAGTTTCCTTTAGCTGCAGGAAGCAAAGGCAGCtgtagaaagaaagaaatgatgaATGTACAATGTATTTGCTTTGTGATGGCTCAACAAAGCTCGGCCAAGTGGAGGAGCCCATGAGGTCACCCTGAAAGTAAGAAAAAGTCAAGGTTATGTGAAGCGCGCTTGCGGATTTCATCATTTCTGCGATCTGCTTTTGTCTTTTAGTCTAATTAAGTACCACACGACGAAGACTTCACCAAACACAAGCTCTGTAAAGAACAAATGCCTTTTTTTCTGGCTCATGTATGTTTCATTTGAGTTGTTTTATGGCCACATTTCTACATTTTATTGTACAAAGTTGTtcattttacataatatttaattaaagtattGTCTGTGACCAATTTCTCCCTGCCATCTTATTTTGGTCTTTTCTTACTCCCCCCAAAAATTCTGAGTTTAACATTAAAGGACAGAAGAAAAGTACAAATGTTACTATTTCAAACAgcgtcaataataataataataataataataataataaaaacagtaaaaatataagaataaatataataataataataataaatgtaataataataacaacaacaacaacatcagc
>TCONS_00009696
CTCGCGGTTACGTGCCTAGCAGCACCCCGCAGCAGTCCAACTACAACACTGTCAGCAACAGCATGAACGGCTACGGCAACACAGGGATGCCCAACTTGGGTGTACCTAGTTCACCGGGCTTCTTAAATGGCTCCTCTGCGAACTCTCCCTACGGCATAGTTCCGTCGAGCCCTACCATGGCAGCCTCTTCGGTCAGCCTCTCTTCAAACTGTAGCAGTACACACGGCATTTTCTCATTCTCACCTGCCAATGTCATCTCTGCAGTGAAACAAAAAAGCGCCTTTGCTCCAGTTGTCAGGCCCCAAGCATCTCCACCTCCTTCTTGCACCAGTGCAAATGGCAATGGACTTCAAGcCATGTCCGGACTGGTGGTCCCCCCCATGTAAATTGCACTCCCTTCCATTGTAAAGCAGCAGTCTCTTCGCTGAGGACGAAGAGTAGTATGTTGTTGTATGGAGGATCTTCCTCGGAGCCGTCATTCGTCATGAAGTTAATCAGCAGCCACTTCTGTTGGAAAAAGACACTTGTTTTCAAAGTTTATTGGAAATCGAAACGCAAGCGACTTGGTCATGAACACTTTCATTTTATTGACTGAATCTCTTGTCATATTTTCACGATCtgg

Function

symbol description
ebf3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain and sensory system. Orthologous to human EBF3 (EBF transcription factor 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-292 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain and sensory system. Orthologous to human EBF3 (EBF transcription factor 3).

Ensembl:

ensembl_id ENSDARG00000100244

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009694 False 4941 mRNA 0.41 16 42436328 42579480
TCONS_00009695 False 4679 mRNA 0.40 16 42436920 42579702
TCONS_00009696 True 622 mRNA 0.50 3 42574148 42577014

Neighbor

gene id symbol gene type direction distance location
XLOC_004941 NA coding upstream 28660 42400249 ~ 42407668 (+)
XLOC_004940 TCERG1L coding upstream 237074 41991635 ~ 42199254 (+)
XLOC_004939 NA coding upstream 476599 41956938 ~ 41959729 (+)
XLOC_004938 bnip3 coding upstream 730418 41697664 ~ 41705910 (+)
XLOC_004937 NA coding upstream 853530 41580801 ~ 41582798 (+)
XLOC_004944 NA coding downstream 184206 42763908 ~ 42781488 (+)
XLOC_004945 CABZ01077176.1 coding downstream 223286 42802988 ~ 42874746 (+)
XLOC_004946 NA coding downstream 528039 43107741 ~ 43151121 (+)
XLOC_004947 NA coding downstream 796784 43376486 ~ 43475540 (+)
XLOC_004948 clrn3 coding downstream 1005825 43585527 ~ 43601943 (+)
XLOC_004935 FP236323.1 non-coding upstream 975694 41460518 ~ 41460634 (+)
XLOC_004933 NA non-coding upstream 1021043 41413512 ~ 41415285 (+)
XLOC_004949 NA non-coding downstream 1108502 43688204 ~ 43691847 (+)

Expression


Co-expression Network