LOC120548461


Basic Information

Item Value
gene id LOC120548461
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10956572 ~ 10962890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU262060
gGGTTTTCCCCGCCTGTTGCTTTCAgttccttctgtctctcctcaggCATAAAGGTAAAATCTCACTGAATTCTGTCATTAAAAGCCTATTTGTGAAACAGCTTTCGACTTGACCTGAAATAAggtttgtgtttgtgtgaagaTGTCGGACCCCGAGACCCAAAACCAGCCTCTCCTGGCAGCTACCAACCAGCAGGCAGCCTTCAATGCACAGGGTGGCCGCTCCTCCCGGGCCTATAAGGTGGCAGGTATAACCCTGTTGGCCTGTGTCCTGATTGTGGGCCAGGCGATGATCGCCTACTTCCTCCTCAGCCAGAGGGGTGAAATCACGTCTCTGAAGGAGCAAAGCAACAACCTGCAGTCACAAATGACGAAGGGAAGATCTGGTGAGGAGGCCAAATATAGTACAGAttagaatacagaatacatagAATACAGATTAGGAGGGATATAATGTACACTGTTGGTATTTAGCAGAATGCCTTTTGTGAGCAGCTaaataatataatgataatagaagagaaaatgtcaaatgtcagaaagaaaagaaatcctaTTACTCATGAGATCTCTGTTAGGGTCTAACTTTCATTTAGTTAATCAATCTGTTTTTTTctacctctcacacacactctttctgtCTGTAGTTGCCGATGCACATGCCCATGAACGCCTTGCCCGAGCTAATGGATGTGGACGAGGAGGCTTCCACTGGAGTCCCAGAAAAAAATGTCCCTCTGCAGGCCACTGACTGCCAGCTGGAGAAAGCTGGTGTGAAGCCTGTGCAGGTCCCTGGTTTCCGCCCCGTCTGTGACGAGCGTGGCCTCTACCAGGCCCAGCAGTGCTTTAAACACCACTGCTGGTGTGTGAACCCAGTCAACGGGCTAGAGGTCGTTGGATCCCTGAGGAAAGGACAGGCCAGTTGCGGTGCACCTGTCTTCACTGGTGCCATGAGCAAACTGTTGACTGTGCCTGATGAAGCAGTCTGATACTGCGTTGATGAAAACGAGAGACGAGCAACAGAAGAACATCTTCATCTAAACTTCTAATCACCATCATATTTGTAGTATTTGATAAGCTAATGGGGTTATATATACTGCTGATAAATtcacaaattatataattatctGCTTGCTATCACCTTATCAGTTTATAGCAACTCATCTGCAACTAATATTATATGCGCATTGATTACTTTGCATCTCCATCATATATAGCTCAAAGTTAAGGATTTTAAAATAGTTTGTTTTGCAAccttcaaatgttttatttagattttgtcccatttgattaaaaaaacatttgccatGTTGGGAAGATTGTAAAGAACAGcacatttttaatatattttgaatatttagaTTAACGGTGTGGTCACTTGAATCTGTAGCCAAAGTTAAGCAGATGAAACTGTGattcaaatacacacacatgcacacgcacacacacacacactaaacacattTAGGTGCAATCAGAAACCAGGAATACTTCACTCTTGAGACAACTGTAAACTGTATTTCCACCATTTATTTTACAACCCAAATAAAACTCTTAAAGACA
>TU262061
TTCAgttccttctgtctctcctcaggCATAAAGGTAAAATCTCACTGAATTCTGTCATTAAAAGCCTATTTGTGAAACAGCTTTCGACTTGACCTGAAATAAggtttgtgtttgtgtgaagaTGTCGGACCCCGAGACCCAAAACCAGCCTCTCCTGGCAGCTACCAACCAGCAGGCAGCCTTCAATGCACAGGGTGGCCGCTCCTCCCGGGCCTATAAGGTGGCAGGTATAACCCTGTTGGCCTGTGTCCTGATTGTGGGCCAGGCGATGATCGCCTACTTCCTCCTCAGCCAGAGGGGTGAAATCACGTCTCTGAAGGAGCAAAGCAACAACCTGCAGTCACAAATGACGAAGGGAAGATCTGGTGAGGAGGCCAAATATAGTACAGAttagaatacagaatacatagAATACAGATTAGGAGGGATATAATGTACACTGTTGGTATTTAGCAGAATGCCTTTTGTGAGCAGCTaaataatataatgataatagaagagaaaatgtcaaatgtcagaaagaaaagaaatcctaTTACTCATGAGATCTCTGTTAGGGTCTAACTTTCATTTAGTTAATCAATCTGTTTTTTTctacctctcacacacactctttctgtCTGTAGTTGCCGATGCACATGCCCATGAACGCCTTGCCCGAGCTAATGGATGTGGACGAGGAGGCTTCCACTGGAGTCCCAGAAAAAAATGTCCCTCTGCAGGCCACTGACTGCCAGCTGGAGAAAGCTGGTGTGAAGCCTGTGCAGGTCCCTGGTTTCCGCCCCGTCTGTGACGAGCGTGGCCTCTACCAGGCCCAGCAGTGCTTTAAACACCACTGCTGGTGTGTGAACCCAGTCAACGGGCTAGAGGTCGTTGGATCCCTGAGGAAAGGACAGGCCAGTTGCGGTGCACCTGTCTTCACTGGTGCCATGAGCAAACTGTTGACTGTGCCTGATGAAGCAGTCTGATACTGCGTTGATGAAAACGAGAGACGAGCAACAGAAGAACATCTTCATCTAAACTTCTAATCACCATCATATTTGTAGTATTTGATAAGCTAATGGGGTTATATATACTGCTGATAAATtcacaaattatataattatctGCTTGCTATCACCTTATCAGTTTATAGCAACTCATCTGCAACTAATATTATATGCGCATTGATTACTTTGCATCTCCATCATATATAGCTCAAAGTTAAGGATTTTAAAATAGTTTGTTTTGCAAccttcaaatgttttatttagattttgtcccatttgattaaaaaaacatttgccatGTTGGGAAGATTGTAAAGAACAGcacatttttaatatattttgaatatttagaTTAACGGTGTGGTCACTTGAATCTGTAGCCAAAGTTAAGCAGATGAAACTGTGattcaaatacacacacatgcacacgcacacacacacacactaaacacattTAGGTGCAATCAGAAACCAGGAATACTTCACTCTTGAGACAACTGTAAACTGTATTTCCACCATTTATTTTACAACCCAAATAAAACTCTTAAAGACA
>XM_039784724.1
GGGTTGTTGTTGGTTTTCCCCGCCTGTTGCTTTCAgttccttctgtctctcctcaggCATAAAGGTAAAATCTCACTGAATTCTGTCATTAAAAGCCTATTTGTGAAACAGCTTTCGACTTGACCTGAAATAAggtttgtgtttgtgtgaagaTGTCGGACCCCGAGACCCAAAACCAGCCTCTCCTGGCAGCTACCAACCAGCAGGCAGCCTTCAATGCACAGGGTGGCCGCTCCTCCCGGGCCTATAAGGTGGCAGGTATAACCCTGTTGGCCTGTGTCCTGATTGTGGGCCAGGCGATGATCGCCTACTTCCTCCTCAGCCAGAGGGGTGAAATCACGTCTCTGAAGGAGCAAAGCAACAACCTGCAGTCACAAATGACGAAGGGAAGATCTGGTGAGGAGGCCAAATATAGGTCTAACTTTCATTTATTGCCGATGCACATGCCCATGAACGCCTTGCCCGAGCTAATGGATGTGGACGAGGAGGCTTCCACTGGAGTCCCAGAAAAAAATGTCCCTCTGCAGGCCACTGACTGCCAGCTGGAGAAAGCTGGTGTGAAGCCTGTGCAGGTCCCTGGTTTCCGCCCCGTCTGTGACGAGCGTGGCCTCTACCAGGCCCAGCAGTGCTTTAAACACCACTGCTGGTGTGTGAACCCAGTCAACGGGCTAGAGGTCGTTGGATCCCTGAGGAAAGGACAGGCCAGTTGCGGTGCACCTGTCTTCACTGGTGCCATGAGCAAACTGTTGACTGTGCCTGATGAAGCAGTCTGATACTGCGTTGATGAAAACGAGAGACGAGCAACAGAAGAACATCTTCATCTAAACTTCTAATCACCATCATATTTGTAGTATTTGATAAGCTAATGGGGTTATATATACTGCTGATAAATtcacaaattatataattatctGCTTGCTATCACCTTATCAGTTTATAGCAACTCATCTGCAACTAATATTATATGCGCATTGATTACTTTGCATCTCCATCATATATAGCTCAAAGTTAAGGATTTTAAAATAGTTTGTTTTGCAAccttcaaatgttttatttagattttgtcccatttgattaaaaaaacatttgccatGTTGGGAAGATTGTAAAGAACAGcacatttttaatatattttgaatatttagaTTAACGGTGTGGTCACTTGAATCTGTAGCCAAAGTTAAGCAGATGAAACTGTGattcaaatacacacacatgcacacgcacacacacacacactaaacacattTAGGTGCAATCAGAAACCAGGAATACTTCACTCTTGAGACAACTGTAAACTGTATTTCCACCATTTATTTTACAACCCAAATAAAACTCTTAAAGACA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko05310 Asthma
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU262060 True 1563 TUCP 0.43 8 10956572 10962890
TU262061 False 1542 TUCP 0.42 7 10956572 10961236
XM_039784724.1 False 1347 mRNA 0.44 9 10956572 10961267

Neighbor

gene id symbol gene type direction distance location
cfap36 cfap36 coding downstream 69930 10873872 ~ 10886642 (-)
LOC120548092 NA coding downstream 115984 10773396 ~ 10840588 (-)
synpo2la synpo2l,LOC104935862,LOC104941279 coding downstream 279411 10666118 ~ 10677161 (-)
myoz1a LOC102777037,LOC100698011,LOC101479401,LOC102214298 coding downstream 294467 10657153 ~ 10662105 (-)
LOC120547803 NA coding downstream 370545 10579948 ~ 10586027 (-)
six3a six3,LOC104943435 coding upstream 172722 11135612 ~ 11139426 (-)
slc3a1 slc3a1 coding upstream 404834 11367724 ~ 11377538 (-)
ppm1ba ppm1b coding upstream 417943 11380833 ~ 11400517 (-)
abcg8 abcg8 coding upstream 532180 11495070 ~ 11507706 (-)
dync2li1 dync2li1 coding upstream 556011 11518901 ~ 11524138 (-)
G192952 NA non-coding downstream 84131 10860173 ~ 10872441 (-)
G192929 NA non-coding downstream 188531 10767029 ~ 10768041 (-)
G192919 NA non-coding downstream 190161 10731907 ~ 10766411 (-)
LOC120547508 NA non-coding downstream 518282 10350824 ~ 10438290 (-)
G192798 NA non-coding downstream 717711 10234182 ~ 10238861 (-)
G192988 NA non-coding upstream 55233 11018123 ~ 11018925 (-)
G193005 NA non-coding upstream 190821 11153711 ~ 11153968 (-)
G193117 NA non-coding upstream 474997 11437887 ~ 11438411 (-)
LOC120547711 NA non-coding upstream 545305 11508195 ~ 11508933 (-)
G193148 NA non-coding upstream 619368 11582258 ~ 11584160 (-)
LOC120548128 LOC103374855 other downstream 2549 10890469 ~ 10954023 (-)
hhat hhat other downstream 300862 10633244 ~ 10655710 (-)
nphp1 NA other downstream 773370 10168452 ~ 10183202 (-)
slc8a1b slc8a1 other downstream 1034753 9771128 ~ 9921819 (-)
eef1a1a eef1a1a,LOC104930997,LOC101166076,LOC103372934,LOC101485550,LOC107375892,LOC107098978,LOC103386869,LOC101063194 other downstream 1315677 9634840 ~ 9640895 (-)
camkmt camkmt other upstream 273424 11236314 ~ 11357672 (-)
lyrm7 lyrm7 other upstream 562016 11524906 ~ 11527284 (-)
adss2 adss,LOC107098117,LOC107375820 other upstream 925202 11888092 ~ 11918814 (-)
phactr2 phactr2 other upstream 1334599 12297489 ~ 12348599 (-)
G193427 dnajc9 other upstream 1984805 12947695 ~ 12948609 (-)

Expression


Co-expression Network