XLOC_004944


Basic Information

Item Value
gene id XLOC_004944
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 42763908 ~ 42781488 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010769
GATGCATTGCAGGTCTGGAGAGAAGTACTCTCTTCTGCCAGAGAGTGAGAGATGATTTGTGTACCGCTGGCTTAGATTAGCTCCAGTCCCCATATTGGACATCATATTTCCCAAGGTATTTTTCCTGCGGGCCTAAGTGAAAACCAGATGTCACACACGTCAGCTGCGAGAGGTTGATGTATGACAGCTGATGGCCTCCACCATGTTGGTCTGCTCTGCAGGAGAGAGATtcgagctgctggatttacaacacgtCAATTCATCAACTTCTCACAAAATGCATGAAACAGTGAGCTTGAAAAACCATTTGTGGGACCCTGTACAAGGTCATCTGAAGCTGGAAGCCTGGAGTCATtgagcacacactcacacacacacacactggcagacTGAGTCCAAACACAAGCTCCTTCTGAGCGCTCGGGCCCTTAGGGCAACAGCAAGCCATTGCATCGTCATTAAGACCAACACAGAGCAGCTATTTATACACCGCACTGCATCACACATACTATACATACTAGCGCATACATGCATGTGCGAGCACCCTCAGGCACACATGCTGCGttctcacaaacattacacacacacaaccgcTGGAATAACGATCCCAAATTAGCATGCACAAAAACGCGAGATGCTTGAAAGGCAAATAGGGTCAAAACTGCCAGGGCGAGAGTGTTCGTGTGTTTGTGCGCGGCTCGTTTTAAATCGCCATGTGTTTTTCCAGACGAATGCAAATCAACTCGTCTTGGAAGAACTCCGAACCAGCGCTCATTTATTTCCATTGGTGCAAATGACTTCAGGACACTACAAGTTGAAAGTGTCAATTATATTCTAACAACCTTTGAAGCCGCCGTGTTGCTCTTGAGGTATTATGCgttatattctaatgatttttgcttTCAAGAATGCATCTCTCCACCAGCCCACATTCGCAGCTCTGAGCAACATTCATATTGTACGTTTCTTTTGTGAATATCTTCAGCAGGCAGTTGTTAACCCCGCCGTGTCACGTTCATTATAAATTGTTTGAATCGCAACAGCGCCTCGAGCCAGCGAGTGAATATTTTCTTAAAACAGAGATGCTAGATTACGCTGATCAGCGATTGCGCTGTGTGATGTAGCGCAGCGCACTAGATCAAGGCGACACGTGAATGTGGCCACTCATGTAGGCGATTACTCAAGCGGCGGAGAGGATATTATTCAGAGTAAGTTGTTAATAAGGGAGTTTATTTTTTCTGACAGAGTGAAAATGGCTTCCTAACGCAGGATGGATAACCCCCTGCTAGCCTGCAGGACGCCGCCCGGACAGTTGCGCGCAAttaggaataaataaatattaacgtCCTCACTTACGCATCTGACGCTAACGTGCTAAATTGGATTAGCCCTCCGATGACCTAATTGCATTGTCGCAGCGCATGTATCTAAAGAGGAGCACTTTGCGGAAAGGTAACATCAGATTAATCTAACAATCAGTAATTGAGACAAATGACACGGCGTGGCCGGCTGTCTGGGTGAAAAACTAGATGAGCTGAGAAACGTGTTGTAGGGTTAAAAGCCAGCACGGTAAGGCAGTGACTTAATCTAAAGACTATTAGCATTAGTTAACCGTGTACTTTTCAATTAGAGCGATCATTTTGCATTTCAGACTTGCTGATAAATATCTTTTGTCGTGGCGCACAGAGGGAGGAAGAGAGAGAGCTTCGCTTGGGATGAAATGCATCACACTTAAAAAAGCTAATGCCTAAACGGAAGGCCAAGTGGAGAGTACAGTCTGCGCAGAGGCACCGTGTGGCATTTCACAAAGGGGGTGGGCGGCGGGGGGCTCGCTGCatattggaaaaataaaataaaactgcaaatCAAAAGGCCCTTTGTATTAAATTACAGTGGGGGCTTCGCAGGAAAGAAGCCTGTGCACACAGACTCTGTGTGAATCTAATAATGAACTTGCatccaaccttaattaaacagtCTACATCCCCTCGCATAGCCATATAATGATGTCAAGCCGGGAAGCAATTAGCTGCCCTTCTCTGAAAGCAAACAGTGTTTGTAAGTCACACAAAGTACTGCGGCAGGCGTGCTTATTGAAACCCtcctgaaaaataaaattaattagtatgtTATGATTTTGGAGATGCCTTAACATTGGACCCAAAGGACAGGGGGCTGAGATTAAAGATGAGCCCCTCTTTCTGCCAGCGCTGGTAACGATAACAGCAGGAGAACCATCTCACCGTCTCATTAGCGGCAGGCCGGGCCAGACTACGCGCTTTGCCCCGCGACATCATAACATCCATTAAAATAAGCTGTCATGCAGTTGTAAGAATAACAACCCACAGTAGACCAAGTCATTTgaaaggggaaaaaagcaaaGTTTTTTCCAACCAAAGGCCCCTCTCCGATGGTTCTTAGGTGTGCGCCGTTTATTTGTGTTTAGAGATCACCCCTTTGTCTGCCTCTGCTAATTAAAGTGATGCCGCACCGCCTGGCTTTGCCGGGGGAAGCACCAGCCAGCTGAGACACCCAATTACACAATTAAGCCTCCTACAAGATCTCCAAATTGTCATGGAAAAAGAAAGCATGCGCTTTCCCCCTCTTTGTCTCCTTATCTGAACGGTGGCCGCCACGTATTAGTTTCACGTTCCGCGCGCTCTCGATGATGTAAAATGCAATTTCGCTCAGCTTTGTTCTCTCTGGAGCGGGGCTGTATATTTGTGTCTATTTACTCGCGTTGAGTTTCTTTTGTCTCTCCAAGTTGTTGCGCGGGCGGTCATTAGCCCGTGCTGTACTGCTAACTTTGTTGAGCGAGAGCATTTGGAGACGCCGCTCTAATTGGCGATGTTTTACAAGGGAAGCACTTATCACTTTGCTTATTAAAAATGCTTATTGGATGCAATAAAACACACATTATGGTGGTGAAATTAATATAGTGCATTGCCCAGAACATAATGCCGTTCTAATGTGTGTCTTGTTCACTCTAATGAGTGCTGCCGAGTTTATTAGCTCTGATGACAGAGGGGCCGAGCTGCGGCTGTTATTGTTTGGTACAGGTTGATGGATTTCGGATGCTCGCGCGTGCACGCCCACGCTCTCTTTATTACCGAGCGCCGCTGTCGTCTAGCCCGGTGGCTTGACTTTAATGCGGTATAAACATATAAATCTGGAGCGGCTCTCTCTTAGCCTGCAGTGGAGAGGAGAGCCTACGGTCGGTCCGGAGTCCATACGTTCTCGCTTATTTCCAGCGCTGGAAAGGAAGCCATTGATAACTTTGTGACAGGGCCAGTCCCGGGAGGGCCGGACAGGGGGGATCGGCTCGGGATAGGGTTAGTAGGTCATTACTGGCTCAGCACAGATCCTTTAATTGTCTACTGAGCTGCTTTGGATCTGTGTCAGGTGAAGGCTTCGGCCAGAGAGAAAAGTGCAACCTAATAGTTTGGCTTTCGGACGAGGGGATCGGTTAGACTTGGTAATGGATGTTTGTGCATGTGAGACCCCTTTGTTTATGGAGAAGGCTCTTTGTTTTCCAATCCTCCCCTTTTTTCCACAAGTTTGAGGCAATTTATTTGCGATCCAATTTCAGCGAGTCTTGCAATCAGGCAATGCAATCCAATTATCTCTTTGATTGGGCGAACTGATTAAAATGTGTAGCCAGACGTGATTATCcgtctctctcactctctctgaaCATATGAGGGAGAGACGCACACGAGGCAGTTGGAATTATAAACACACTGTATGGTAAAATGTGCATCGCACAATATGGCGCAGCTTGATGTTTTATCAGCCAGTAGAGATTTTGCTATATCGTTAAGCGGTGGCCAGTGGCCAATACTATGTTATATTTAAGACAACAAGTAAAGATGAACTTCTTTTGTTGAGCATATAAACAGTGTTTACAGTTAGTGCCATTGTAATTTGGCATAGTAATATAGATAGTAGCAATGctatttttatgtgtgtttcaTACATTTTTGTTCATTCTTGTTTTATTTGTGGCCCATCTACGTACTTTTGAATATGTGTTTTGTAGTATTCATTTAACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010769 True 4053 lncRNA 0.45 3 42763908 42781488

Neighbor

gene id symbol gene type direction distance location
XLOC_004942 ebf3a coding upstream 184206 42436328 ~ 42579702 (+)
XLOC_004943 NA coding upstream 299678 42461125 ~ 42464230 (+)
XLOC_004941 NA coding upstream 356240 42400249 ~ 42407668 (+)
XLOC_004940 TCERG1L coding upstream 564654 41991635 ~ 42199254 (+)
XLOC_004939 NA coding upstream 804179 41956938 ~ 41959729 (+)
XLOC_004945 CABZ01077176.1 coding downstream 21500 42802988 ~ 42874746 (+)
XLOC_004946 NA coding downstream 326253 43107741 ~ 43151121 (+)
XLOC_004947 NA coding downstream 594998 43376486 ~ 43475540 (+)
XLOC_004948 clrn3 coding downstream 804039 43585527 ~ 43601943 (+)
XLOC_004949 NA coding downstream 906716 43688204 ~ 43691847 (+)
XLOC_004937 NA non-coding upstream 1181110 41580801 ~ 41582798 (+)
XLOC_004935 FP236323.1 non-coding upstream 1303274 41460518 ~ 41460634 (+)
XLOC_004951 CABZ01052809.1 non-coding downstream 1845402 44626890 ~ 44627007 (+)

Expression


Co-expression Network