G195115 (gclc)


Basic Information

Item Value
gene id G195115
gene name gclc
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 19272600 ~ 19275222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU264949
CTGAGGCACGTTTCTTGATGAGCTTCAGATAATTCAAAATGGTGCACCTGGTGTCCACATCCACTTCCATGTTTTCCAGATAGCAGTTAAGGATTGGTATAAGCCCTTGAAATACTCCCTCCTGgtgataaaaacaaaagaaaacagcagTAATTGTTAGAGGGCTTAAAACAAGACTGGGAGTCGtcagccatgctagtggctctGTGAGACTGTATTAATTTCCAGCTGTGATTTGAACTAAATACAATCATGCAATGTAGACAGAATGGGAGGAACCGGAAAAACCTCCCATTATTCCAACTCAAGTTTAATGCGTTACAATTtttaattagcactaaacacaaagtacagctgaggctatGTGAAAGTTGTTAGAGTTATTCCTGAGGGGAACCTGAATGTTTGTAGTGAATttctagcctggaaatccagacccaaatccaaaAGActaagggtctggcattgagtaatgaaaatggcccaactcgaggggcggcaccaagcatgcatttgaaaatctctctgcacgcaattggataacactacgactaatcacaacaatacacggggtgacgtatccagagccccatacgcttcgctaccagcggagctaactggtagattaaactgtcatctgtttagctcgcctctggcccgcctacatcagatacaccgatgtgattggtgcagcttggctacaagggcatagttaatgagcatcattactcgtTGCCACAGTAACtcactgagcaaattcaaattgtgctctcgtgagaactctggatttccagagTAGCAATTTGCATGGTaattcatccaatagttgtcaagACCGATCACGTGTCAAACCTACAAATGTCAACGTCATGGTGGCGTTAGCAAAGGTCagcaggattcatcctctgggtaCCATGCATGTTTGTattcatccaatagttgttgagatattgtCATCAAGTGTAAGCCAATAATTACCTTTCCGTTGATGATTGTGTCGATACTCATTAGCGTGTACTCCTCATTAGCACCATCAGTCTCCAAGCCGTTCTCAGCTGAGGCTGTGCCATCAAGGACTGGGTTGCAGCCTTTAAAGATGTCCTTTCGGAAGTAGAACATGCCCTCCTGGACAGAGTTTCTCTTCTGAGCAACCTTCATGTTTTCATCAACCTTTGACAATGGGATCAGAAAGTCCAGTTTATAAGACAAAATCACTCTGGTGAGCAGGACGACAAAGACCACATACGCAGCGTTTTCAAAGTCAGTTAGCTGCACCTGAAAGATAAAACCatcatgtgtttgtctgtatttgaAAGGCCATGTGATCGAATATAAAGTAAGGTTACAACTAACGGCCTGGTCAGTTGTATTTACCTCCATGGGGCGGAACTCAACTCTCCAGCCGATATCGGAGTTCGGAGGTGGAGGTTTGAACCTCATCGTCTGCCAGTTGGTCGACTGAAGGTTCTGCAGGAAGACAAGTTTGAATAAATACTCAGTTATGCTGGAGGTAAGCCTGTATTGTGTTTTGACACATGGTTGGCTTTCTTCTAATCACCTCAAAGTGATCGGACTCGTTTTCATCATCCAAGTGGATTTTCTCCTCAAAGACGGAGAGTGGATCTCGTATGAAGAGGTGTGCTATGTGCTGGGCCAGCAGTTTGTCAATTCCTGCATCCAGCAGCTGCTTGTAGATCTCCTCGTCTATCGTCAAATCAATGTCATTGTACTTCTCACCACAGCTAGACAGGTAGCTGTCGATTGAATCGTATCTTGACTTGAAGATCcggtatttgttgtttttcaaagGCTTGAGCCCGCGTTCCTCCTGCGTCCTGTCGTCCACCGAGGCAGAAATAACTTCCCAGCGACAATCATTATCTGACACAAAGCCTCTGTAGAAGGGGGAGGCCGCACTCAACGCCAT

Function

symbol description
gclc Predicted to enable anion binding activity; glutamate-cysteine ligase activity; and magnesium ion binding activity. Predicted to be involved in several processes, including alpha-amino acid metabolic process; cell redox homeostasis; and glutathione biosynthetic process. Predicted to be part of glutamate-cysteine ligase complex. Is expressed in several structures, including alar plate midbrain region; gut; intermediate cell mass of mesoderm; midbrain; and sensory system. Human ortholog(s) of this gene implicated in cystic fibrosis; glutamate-cysteine ligase deficiency; hemolytic anemia; and myocardial infarction. Orthologous to human GCLC (glutamate-cysteine ligase catalytic subunit).

NR:

description
glutamate--cysteine ligase catalytic subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264949 True 1927 lncRNA 0.45 5 19272600 19275222

Neighbor

gene id symbol gene type direction distance location
fbxo9 fbxo9 coding upstream 26028 19238443 ~ 19246572 (+)
agpat5 agpat5 coding upstream 61835 19201585 ~ 19210765 (+)
npy4r npy4r,LOC104948431,LOC103369003,LOC103476986 coding upstream 107664 19157708 ~ 19164936 (+)
LOC120548486 NA coding upstream 116718 19152305 ~ 19155882 (+)
LOC120548575 LOC103369005,LOC102192035 coding upstream 119565 19142893 ~ 19153035 (+)
eloal LOC102784945 coding downstream 14929 19290151 ~ 19296232 (+)
lrrc1 lrrc1 coding downstream 23660 19298882 ~ 19326174 (+)
LOC120548542 NA coding downstream 52820 19328042 ~ 19356743 (+)
fam83b NA coding downstream 101865 19377087 ~ 19383769 (+)
hcrtr2 hcrtr2,LOC102199474 coding downstream 123172 19398394 ~ 19426204 (+)
G195087 NA non-coding upstream 53558 19218736 ~ 19219042 (+)
G195086 NA non-coding upstream 54182 19216483 ~ 19218418 (+)
G195048 NA non-coding upstream 60719 19165731 ~ 19211881 (+)
G195043 NA non-coding upstream 127495 19144760 ~ 19145105 (+)
G195037 NA non-coding upstream 138436 19131999 ~ 19134164 (+)
LOC120548551 NA non-coding downstream 82825 19358047 ~ 19361216 (+)
G195285 NA non-coding downstream 492852 19768074 ~ 19768317 (+)
G195361 lmbrd1 non-coding downstream 901298 20176520 ~ 20177637 (+)
G195511 NA non-coding downstream 1370088 20645310 ~ 20658889 (+)
G195520 NA non-coding downstream 1494672 20769894 ~ 20770215 (+)
zgc:163080 tmem14a other upstream 56177 19212832 ~ 19216423 (+)
mcph1 mcph1,LOC102776803 other upstream 72595 19167986 ~ 19200005 (+)
G195036 LOC103369008,LOC106520712 other upstream 140659 19126220 ~ 19131941 (+)
G194908 NA other upstream 421697 18844430 ~ 18850903 (+)
prdm8 LOC104947267,LOC103357713 other upstream 588263 18680957 ~ 18684337 (+)
gfral NA other downstream 151253 19426475 ~ 19430096 (+)
adgrb3 adgrb3 other downstream 766552 20041774 ~ 20156948 (+)
G195448 thbs2 other downstream 1254545 20529767 ~ 20530315 (+)
G195518 NA other downstream 1477551 20752773 ~ 20753809 (+)
fbxo11a fbxo11,LOC104951339 other downstream 2043388 21318610 ~ 21332577 (+)

Expression


Co-expression Network