G195711 (tacc2,LOC104945673,LOC102313393)


Basic Information

Item Value
gene id G195711
gene name tacc2,LOC104945673,LOC102313393
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 21965685 ~ 22049812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU265742
tatcaTCTTTCCACATGCCCCTGATTGGGAATCAATGATCTAAATtaagagaaaaggaaaatatacaccccaaaacaaaaagtaaaaaagaaacaaacgtCCATAATGCATCATTGCATCACAATGTCAAATAATCATAATCACATCTTAATCCTGATTTATCATTGGTCATGCCATGCCACTCAGCTCATGAGAAAACATCGTCAGTGAACCCAGTGTGCTGTATTGCCATCTTTTATTGCACTTTGTAAGCAGATGCTGTACAGCAGCTGTGCAGAGAGTTATTCCTCAGTGTGACACGACCACAGCAAGACATATCCATCCAAAATTAAATCACTCCTGGTCACAACTGAATAAGGTCACAATTAGTTTGCTtcatatcaaaataaaatcccaaAAAATAGTCGCACAATTTTCTCAAGAAAGCTATGACAAGTATGACAAATATCTACAAGGTTACATGAGGGAAGCGGGCCGAGGATGACAGAATAACTATCAAAAATGCAGAGGAATCTTTTACATACTTGGAATttcctacagtatatacaaacaTACGTATAACATACCAGTTCTCCTTTATTTCCCAACATGCAGTAAGCTATTGTGATAGTTTGTGTTCTCTTAGTGGTGTATCAACATTTTGTGAATATATCTAAATCTCTGTTACTCTTTTtcgaagtctctttttctcgtATCAAGAGGAGACAACAACAGGAACGGGTAAACTGTCTTCTCCCTCAGTGGCTGTCATGGCAACATAATTATAGATCATTCAACCCACAAAACACTTCTCTGGTTTTctcgttaaaacacacacacacacacacacacacacacacacacacactcacactcacaaacaaacacatttcgACAATATATCCAAAAATGAATTTGTGGGTTTGTACGACTTAACAgcattttatattacattatatggGTATTTCTGTAGCATGCAAACAAAAACACTTAACAATGGGACAACCAAAGAGACCTGTAAACCATATAACAGACTGGCAGCTGGTTCGCTTTGAGTGGCTTCCAGACCCTTCGGTATTTAATGACAAAGCTTACAAAGTATTTCAGCCCCCTCCCAGCGCTTCCTTTTCTGTCAAAAGCTAAGATGACCAACCTGCTTAACTCACTAAGTCTGAATGAATGACTTTCGCAACCATTTACAGTACAGAAGCAAAGTGCAGATGTGCGTCTTAAGGTAGGCCTATATGTACATCTAAAAAAGTTTCTATAATGTTGTACTTAATATCAGCATCTAAAGAATTACATAAAGTAAATGCCAAATGATTAGTTttatccattaaaaaaaaaaaaaatacagtgtcTCAACATACAGGATGAAACGCAACAAAATGGACAAACAAACGTCACTGGATGAGATGAAGAAAGTGAGCACATCTGCTCCCCTCTCTGACGGACGGGTGGAGAGATGTAAGCTGACACAAACAAGTGAAGGACAGTTCCGCGTTACTCACCTGGCATGCCTGTCAGGGTTATCAAATAGTAAGGGGAGCAAAGATGGGAGCAGAACAGAAAAGAAGGGACTGTGTTAAGTCAAGCTGGGAGGGCAAGACACGTGAGAGAGCCGAGTGTTAGACATGAGCAGAGAAAGATTGTTGCTTTTTGTGACAGTGCTTTAATGAGAGTAAGAAATGAAATTAGACGGCAGCGAAAAGGAATAATGTCAAGTGAATTTAAAATTGAATGAGCCCAGAGAAGCTGGACACGCGTGGGCAAATGGTGAGCGCCTCCCCCTCCAATGACATCAGGATTCACTTCATATCAATCAAAACATGAAAGCAAGCACATAGCAAAGCTAGCTTGTGtcagaggataaaaaaaaaaaaagaccacttAATTCTGAAATCAGTGGCAATGGAGTAGGGCACacgtatacagtatattttgctCAGTTTGCAAATTAACAAGTGCAGCCAAAAGTAGTGGCAGAGGTTGGGGATCAAAAGTAATTGGGTTGAAATAAAATTCACGCGTGCTGAAAAGACAGAGGGTACAGTCACCTCCGACCAATGCTCGTGTTTTGGGAGAAAAcctgtttttaacattgaacTCACCTATCATCTGTGCAATGGTCCTCTCATACTCAGCAACAATCCTCCTCATCTCCACCACTTCCTGTCGGCTGTCTTCATACTTCCTCTGCCACTCCAGCACTTCTTTCTCCTTGGTCACGATCTCCTCTCGTGCAATGCCCAGAGAGTGGTCCAGTTCTCTGGGCAGGTGGGGACTCTCCCCTTCGATGTAGCTGGTGGTGGTCCTGGCGTACAGTGAGTTCATGGACACGCCACTTTCCACTGGAGAGGACACGTCTCGGTGCTGCTTCCAGGAAACAGAGGAGAGGCgggagaggaaaggaaacatAACCAGTTACAAACCAGACTGAGCTACAGATGGGACACCCTCACCCTCGAGCCCACACACATTCCTGAACCAAACCACAAGGCAGCATCAAACTACATCAAAATGTACCACACAGCAAAATCAATATGTTAATGAGGCAGGCTGGTGATGTTCCTGAAGACTTGGTCAGCTGCCACATGATTGGATGAAACAGTCTTCATTGCCACAGTATTAGCCAAGTGATTTGGCTGATGCTGCCCCCAGCTGAGCGGTCATGATCACCTGCTCATCGCAGTAGCTTGAATATGATTGGGTCCAGACAAGGCACACAGGAAGGAGAGCAGCAATTGATACAGCGAGGGCTGCATCATATACAGGAGAGGGAG
>TU265743
tatcaTCTTTCCACATGCCCCTGATTGGGAATCAATGATCTAAATtaagagaaaaggaaaatatacaccccaaaacaaaaagtaaaaaagaaacaaacgtCCATAATGCATCATTGCATCACAATGTCAAATAATCATAATCACATCTTAATCCTGATTTATCATTGGTCATGCCATGCCACTCAGCTCATGAGAAAACATCGTCAGTGAACCCAGTGTGCTGTATTGCCATCTTTTATTGCACTTTGTAAGCAGATGCTGTACAGCAGCTGTGCAGAGAGTTATTCCTCAGTGTGACACGACCACAGCAAGACATATCCATCCAAAATTAAATCACTCCTGGTCACAACTGAATAAGGTCACAATTAGTTTGCTtcatatcaaaataaaatcccaaAAAATAGTCGCACAATTTTCTCAAGAAAGCTATGACAAGTATGACAAATATCTACAAGGTTACATGAGGGAAGCGGGCCGAGGATGACAGAATAACTATCAAAAATGCAGAGGAATCTTTTACATACTTGGAATttcctacagtatatacaaacaTACGTATAACATACCAGTTCTCCTTTATTTCCCAACATGCAGTAAGCTATTGTGATAGTTTGTGTTCTCTTAGTGGTGTATCAACATTTTGTGAATATATCTAAATCTCTGTTACTCTTTTtcgaagtctctttttctcgtATCAAGAGGAGACAACAACAGGAACGGGTAAACTGTCTTCTCCCTCAGTGGCTGTCATGGCAACATAATTATAGATCATTCAACCCACAAAACACTTCTCTGGTTTTctcgttaaaacacacacacacacacacacacacacacacacacacacacacacatacacccacacataaacacacacacacaaacgcgcgagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
tacc2 Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; nervous system; tail bud; and trigeminal placode. Orthologous to human TACC2 (transforming acidic coiled-coil containing protein 2).

NR:

description
PREDICTED: transforming acidic coiled-coil-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265742 True 2762 lncRNA 0.42 4 21965685 21971410
TU265743 False 1026 lncRNA 0.40 2 21965685 22049812

Neighbor

gene id symbol gene type direction distance location
LOC120547713 psap,LOC104957284 coding upstream 165591 21790970 ~ 21800094 (+)
mrps6 mrps6,LOC102780815 coding upstream 176780 21787187 ~ 21788905 (+)
micu1 micu1 coding upstream 190810 21739841 ~ 21774875 (+)
pla2g12b NA coding upstream 312558 21649893 ~ 21653127 (+)
LOC120548353 NA coding upstream 319580 21639718 ~ 21646105 (+)
mrpl14 mrpl14,LOC102799944 coding downstream 21069 22070881 ~ 22072916 (+)
LOC120547561 LOC103358480,LOC103387545,LOC101064754,LOC103134145,LOC108234077,LOC106959257 coding downstream 38295 22088107 ~ 22094223 (+)
cfl1l NA coding downstream 49494 22099306 ~ 22101867 (+)
mgme1 mgme1,LOC102788050 coding downstream 81309 22131121 ~ 22133520 (+)
ephx5 ephx1,LOC103358491,LOC102206915 coding downstream 100136 22149948 ~ 22153326 (+)
G195687 NA non-coding upstream 184246 21779247 ~ 21781439 (+)
G195685 NA non-coding upstream 186609 21731052 ~ 21779076 (+)
G195679 NA non-coding upstream 294210 21667615 ~ 21671475 (+)
G195650 NA non-coding upstream 417769 21546446 ~ 21547916 (+)
G195654 NA non-coding upstream 449244 21515758 ~ 21516441 (+)
G195749 NA non-coding downstream 2719 22052531 ~ 22056793 (+)
G195757 capn11,LOC103387546 non-coding downstream 31317 22081129 ~ 22083740 (+)
G195771 snx5 non-coding downstream 75738 22125550 ~ 22126288 (+)
G195783 NA non-coding downstream 92413 22142225 ~ 22144422 (+)
G195881 NA non-coding downstream 96491 22146303 ~ 22146792 (+)
G195653 LOC102296834 other upstream 450557 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 633108 21318610 ~ 21332577 (+)
G195518 NA other upstream 1211876 20752773 ~ 20753809 (+)
G195448 thbs2 other upstream 1435370 20529767 ~ 20530315 (+)
adgrb3 adgrb3 other upstream 1808737 20041774 ~ 20156948 (+)
kif16bb NA other downstream 105590 22155402 ~ 22184492 (+)
tasp1 tasp1 other downstream 598102 22647914 ~ 22692604 (+)
disc1 disc1 other downstream 1512471 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 1769102 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 2308114 24357926 ~ 24367599 (+)

Expression


Co-expression Network