G196028


Basic Information

Item Value
gene id G196028
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23032452 ~ 23034791 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU266168
TCATATACAAACCAGTGACTGAGAAAATGGCTCATTTGAAGCTGTACTCTACATGTACAACATCTTGattgatttgtgtgttttttttttttatttatagttttgtCCTCACAGTTTACAGGAAACTGGAATTTGCAGGAGATTTCTCTTCCCTCAGTGGTGGATGGTGAACTCATTATTTCCAAGTAGTCCCACAGTACTGCACTCAATTCCTGCTAAACACTGgactactgtacatatctgGACATGATACATCACATTGTAGTCAAGCATGTCTGCACAATTGGGGAaaactacatacagtacaagccATTCAATTCACACAAGAGCAAACTGGCCAAAATCAATTAGTTACTCCTAAAATGGACATCTAGAAGTTtgaattgtaattatataaccAAGATGGTTTACTTTGGACACATATGCTTGTAATCTTACTTCTGAAGTGTACAGTTACTTGAATCTAACAAACAGGCATTATATTTAATGGTCTGCATCACTCCACCAGTTTTGCCTTGAAATGCACAAAATTGATTCCCCAACCACACTTATCAAAAAGGAGCACTCAAACTCACGCTGCACAGTAAATTTTAAgactgaatatatatattttgtttattatagcatttttaattttacatCCAATGTTAAAAATCGACAACATTGTGACAGCCAGCTCCATTTCTCCGCCATCCCCTCCCTCCCAGTTTCCCATAACAAGCttgttaaaataacatttttaagacctttttaaagcAAAGGCACATTTTTCAATAcgtgtttttaaaaaggaaaataaaggcAGGCCAGCAAGTAGAGTCAGTCTGGgaagcagagaagaagaagtgaGAGGCTTCCTAGGACAGCTCCAGCGAGCCTTCAGTACTCCACATTTCtggaacacaacacaaaacctgACTTAGAGTAAAGGGCCCAGACCTGGTTTGTCTGAGAGGGAAGGTCGAGGGCCAGAGGAATTTGGGATGAGCGTAAAGTCACAGGGGCAGAAGACCTCATTTCTCCACTCCACACTCTTTAACACTTGTCCTGAGCCTCCTAGCGACGGAGGTTAAGTATAAGTCTGTCTGAGAGGGGTGTGCTGTGGCGGGGTACACCCAGGCCTGCCTGGATGGTAGATGGGGGACGAGAGATCAGTTCTCCTCCCGACTGTCCTCCCTGCCGACCCTCTTTATGGAGAGTCCTGGCCTGTTGGAGGCTAGCGGCTACATAGTCTACCAGTCCGACAGGAAACCAGTGGGCTGAGAGAGGTGGGACTGGACCTATGCCTGAaggtcctcctcctcttgtGTCTCTATTGGTCCCTGATCATGGGAGGCTGAGTCAGAGAGCCGGGCTGCAGGGAGAGACGCAGCTCCGTGTCATACGAACACTTTGGCGAGAGCATCTGCCCCGGCGCTGGCAATGTAGCACTTAGATGGATGAAACGCCACATCGTGGATCGACTCCTCAAACTTCTTTCTGTGAGCCGTGAACTCCTGAATGCAGGTTTTACTGTCAAGGTTCCACAGACGGATTGAGCAGTCATGAGATAAAGTCCATTAGGGTCTACAGCTAAGCTTGTGACAGCATCCAGGTGAGCCACCATGGAGTGAATCAGCTTCCCGCTGTTGTTGTCGAAGAACTTAATGTGTCTGTCCTCCTGCGCAGTGATGGTGATGGGAAGAGTCGGGTGGCTGAGGACCTTATTGATCTGACAGGAAGTGCCTGGTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266168 True 1734 lncRNA 0.45 2 23032452 23034791

Neighbor

gene id symbol gene type direction distance location
vit vit coding upstream 320 23011389 ~ 23032132 (+)
LOC120547567 LOC104953149,LOC103387627,LOC103374175 coding upstream 23233 23002004 ~ 23009219 (+)
spast spast,LOC103374668 coding upstream 49849 22978152 ~ 22982603 (+)
mkks mkks coding upstream 68498 22959309 ~ 22963954 (+)
jag1b jag1,LOC102209890 coding upstream 112140 22894831 ~ 22920312 (+)
gpatch11 gpatch11,LOC102790129,LOC102788696 coding downstream 46188 23080979 ~ 23083906 (+)
LOC120547580 NA coding downstream 50141 23084932 ~ 23094240 (+)
LOC120547579 NA coding downstream 65124 23099915 ~ 23110571 (+)
LOC120547578 NA coding downstream 77868 23112659 ~ 23126098 (+)
LOC120547586 ggps1,LOC102790345 coding downstream 268413 23303204 ~ 23319036 (+)
G196017 NA non-coding upstream 41750 22990433 ~ 22990702 (+)
G196016 NA non-coding upstream 42562 22989684 ~ 22989890 (+)
G195973 NA non-coding upstream 68322 22963967 ~ 22964130 (+)
G195968 NA non-coding upstream 107790 22922776 ~ 22924662 (+)
G195964 NA non-coding upstream 110553 22921175 ~ 22921899 (+)
G196036 NA non-coding downstream 101655 23136446 ~ 23144652 (+)
G196057 NA non-coding downstream 112021 23146812 ~ 23147635 (+)
G196111 NA non-coding downstream 154809 23189600 ~ 23190156 (+)
G196124 NA non-coding downstream 223345 23258136 ~ 23261055 (+)
G196140 NA non-coding downstream 319181 23353972 ~ 23354341 (+)
tasp1 tasp1 other upstream 339848 22647914 ~ 22692604 (+)
kif16bb NA other upstream 847960 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 1517324 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 1699875 21318610 ~ 21332577 (+)
G195518 NA other upstream 2278643 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 527492 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 784123 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 1323135 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 1333163 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1529759 24564550 ~ 24569167 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1698338 NA non-coding NC_048584.1 CM023238.2 45500178 ~ 45501566 (+)