klhdc3 (klhdc3)


Basic Information

Item Value
gene id klhdc3
gene name klhdc3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23818914 ~ 23851605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU266559
GGGACTCCCAGTGTGGATAGCAGCATTGCTTGTCTAAACACCAGTTAACCACAACAAACTTGACAACTGAAGGTCAATGGTGTTGGCTTGATGGAATCCAAGCGGGTGGCAGAGTGATGGTCTAAGGACTCGCAGTCACGGAGGTGCTTGCGCGTGGAATGTTGCGCTGGTCGGTGCACCTAGAAGGAGGGCCGCGGAGAGTCAACCATGCTGCTGTGGCGGTGGGGCACAAGGTGTACTCCTTTGGAGGCTACTGCTCTGGGGAGGACTACGAGACACTCCGTCAGATTGATGTGCATGTCTTCAACACAGGTCGGTGGTGAACATGCATGTATATATTGATAAATCCATTGGTTTTGGATTTTCTTAGAAAGTCTAGGAATTGAGGGAATTTGATGTAATCTCTTGTTTTCGGCAGTTTTTTTGCCAGTGTGTG
>XM_039784197.1
AGGTCAGTATGCAGCCGACAGAAGGTGCTAGTGGACGCTTTTCCTCCCAACACGTGACGAGGGAGTCGGTAGGGACTCCCAGTGTGGATAGCAGCATTGCTTGTCTAAACACCAGTTAACCACAACAAACTTGACAACTGAAGGTTTCAATGGTGTTGGCTTGATGGAATCCAAGCGGGTGGCAGAGTGATGGTCTAAGGACTCGCAGTCACGGAGGTGCTTGCGCGTGGAATGTTGCGCTGGTCGGTGCACCTAGAAGGAGGGCCGCGGAGAGTCAACCATGCTGCTGTGGCGGTGGGGCACAAGGTGTACTCCTTTGGAGGCTACTGCTCTGGGGAGGACTACGAGACACTCCGTCAGATTGATGTGCATGTCTTCAACACAGTGTCTTTGCGCTGGATGAAGTTGCCTCCACTGAGGACAGGAGGACATGAACGCGCCCGTGAAGTGCCATATATGCGTTATGGCCACACAGCTGTGCTATTGGATGATATTATCTACCTCTGGGGTGGGCGTAACGACACAGAAGGGGCCTGCAATGTGCTTTATGCCTTTGATGTCAACACCCACAGATGGTTCACACCCAAGATTTCGGGTACTATTCCAGGGGCAAGGGATGGCCACTCGTCCTGTGTCCTGGGGAAGGCAATGTATATATTTGGAGGATATGAGCAGCTGGCGGACTGCTTCTCCAATGACATCCACAAGCTGGACACCACAACCATGGTTTGGTCATTAATTAATGCCAGGGGCACTCCGGCACGCTGGAGGGACTTCCACTCAGCCACCATCATCGGGACAAagatgtttgtgtttggagggCGAGCCGACCGCTTTGGTCCCTTCCACTCCAACAACGAGATCTACTGCAACAAGATCAAAGTGTTCGACGCAGAGACCAACTGCTGGCTGAGCACCCCTTCAACACAGCCGTTGCCAGAGGGACGCAGGAGTCACTCAGcctTTTCCTACAATGGGGAGCTGTATATATTTGGCGGATACAATGCACGCATGGACCGGCACTTCAACGACCTCTGGAAATTCAATCCAGAAGCCTTTTCCTGGAAGAAGGTAGAACCGAAAGGGAAAGGCCCATGTCCACGGAGACGACAGTGCTGTTGTATAGTTGGAGAACGAATTATCCTCTTTGGAGGAACCAGCCCCTGTCCAGAGCAAGGAATGGGTGATGAATTTAACCTCATGGATCATTCAGACCTGTATATCTTAGACTTCAGCCCTAATTTGAAGACGTTATGCAAAATAGCTGTTATTCAGTACAGTCTGGAGCAGTCAGGACTCCCACATGATATCAGGTGGGAACTGGCAGCCATGACCACCAACAGCAACATCAGCAGGCCCATCTTCTCCTCCCATGGCTGACACGGCAGAATGTGAAGCAGAACTAGGACTGAGGACGCTGAGCTTTTATCTTTCTAATCAACCGAGCTCCAACAGACAGTTTTTGCAAAAGTTTGGATCTGTATGGGATATATTTTCCACATTCTTCAAGTGAAAACTCCTCACTGACCAAAATATTCTCCGTATGACTTCCTTGGACACCATGAGCCCTCTCATGTATAAGGATATTTTAAACCTTGATACACTGGTTACATGTGACAGAAAAAGTTGACACCTGTTCacatttttgtcttctttctaGCCTCTCTAGAAATCCAATCAGCCTATGATAATCATAGACTTCTAATCTTAAACACAGGTAGAGACAAGAACTTCAGCCAAAGGTCTTGGGAGCCAACCTCTTTGTTGTGGATGTCGTCCTGATGTCCCACTCGACAGAGCTCCCCTAAGAGACTAATGTGAGCATTCTGTTCCAGATAAAAAGAGACCGAGATGGTCACGAGTTTGTATATCTTGCAGGTCTAACTTTGTCATAAAACCATGTCAAACTACCATGTCCATTTGCGGGAAATGAAGATATGTACACGGATTGGACGTGACTAACTTATTACTTTGGCGTTAAATGCAAGGAGAAAGAGTATAGGGTTTATAGTGGTATGCTTGTGAAAGGTTCCATTTGAGTGACTTTCGAAGCTTACCTTGTTCCCTACTTCACCATAACATGGCGAGCACCTTTCTGCTCTCAAGTGTCTCAAAGGTGATTTGCAGGGCGACTGAAGCGAGCCGTCTGTCCGCCTTGTAAAATAATCAAGTCCATCTACCTCCCTCAATAGCATGTATCATTGGGTCTTTAATAAGACTAGGTAAGACTaatgaccccccccccaccccacccacacacacagaaacaaaaagcCTTTTCACACAGAAGTTTGTATTCAAGTTCTAGTCCTAGTGTCACTGGAAGAGTGTGACTCACCTGCCAGCTGCCACACCACCCCACCCCTTAACCCTGTCGTTTGTTTTTCAGTGCCAAATGTAGAAGGGAATCATGATGcaaatatatactgtgtatgtgtgtaagcaCATGGCCCCGTCTACACATAATCCCAGCCCAGCTGTTTCAGTTTGCCTGTTGTGGGGGAGATGATCACTAATATGCATAATGTAGTTGTTACACTTATAGACAATCCTACAGCGATCAGAGACTCTTCTCATGACCACGGTACGgtgaaaaataacagaaaagtgtgcatgtgtgtttgactACAAAGCAAAGCTAAACCTGAGCAGATTATTAACGCATAAGGGCTTACACACTCGCCACACAGCTGGGAAATGACTTGGAATGGCTCAAATTGGGGATGTTTATTcaggttgtgtgtttttattctgaTTGCAAATTTTAGAACAAAACTTTTAAAACAGGAGTggtggtggttttttttttttttttttaaagcatctcTTGTAATCTCCATCCACTTTAGTCAAAGGATAAGGttggtgatattctatatttttgacatagtcaacaaatcccataaaGACCAAAACCTCCGATGTGTTAGTCCATCTCTCAACACATCCCTACCCTGTCTGTGGCCAACCTGAGGTTAATTCATTTCCTTAAACCGCtggtcactgtagtttttaacaGTTGTTACTCAAACAGAGCTAAAAAAGCATTTTTAGGAACTTTTTTTCAGTCGAAAATTTGGTGCCCTCGACGGACTTGGGCAGCAGGACGATGTGTTTACTTTGAGTCGATATTAAACTAAAGTGGCCTTGGTCATTGTAATCCAGTACAGTGCTGTGGCTCATTTACAGAATAAGTTAATAGTTTTTGGATGACATTTAAAAGTCTATGGAGTAAGATATACCAGGCTTTGGATACACAGACAATACTTGTTGGAttaattcattgttggttttggtctttttatggAATTgttaactgaaagaaaaatacaaaatatcacTCATCTTTTGAATCTTACATACAAGAATAATAAGTAATACGGCATGATGTTGAAATGTTTGACTTGGTGAGGATGAATATACAGGCAAAAAAAGTTGTATTTATACTGCCTATTTATTTTGATGTGAATAGGAACTGTTACCACACACTTGTGACCTGTATCAATGCTTTTCACTCCTGGTCTTTGGGACCATGTGTTTTCTGTCCGGCCAGATAGTTCCATTGAATCTGTATCAGTCAGTTTCTGATTAGCTGGTTAGAATTAAACCCTTCAGGGCTCTAAGTCCCAAACATCAGGATTGGATAACACTGTCCTACAAAGTAAATGTTTACAAATCTGTGCATTTCATGTGAAGCAGTGTAAACAATCTTAAACACCAGATAACTGCACTAAAGCCAATCGTGGCATGTCAGGCCTTACAGGGAAGAGACATGTTGATGCTGCTCTTTGCCTCCGCAGAGTTCCAGATGTTTGCCTGCCCAAACCATGTCTGAATTTTATTATAGACCGGTGGTGCCAATGTGACTCATATGGACATATCGCACACTTGCTATTCCTCAGTACCCCAGTTACTTGGACTATACAACAGCTAATGCAGTGAAACCACAGGGAAGCTAATCACAAAAGAAACTACCGGTGAACAAATCAAACTGTTTATGTGACACCAAATGGCCGTTGGCAAAACTGCTGTTattagttgtttgttttttttcccttttttttttttctaatgtgtGGTTAGGGCtagtcatttttatttcaggAAGATAATGGGTGATGCCATTTTCAGTCAAGAAGTTTTCAGGAATATGACATAAGTAATAAGTAAATGACAATGTAGACACTattgtcaaaaataaaatacctgCACAACAAATTTCCTCAGTGATGGTCACTCACTTACCCTAAATATGTTACATTTTTAGTGGCAGTGATGTAAAAACTACAGTTTTTGAGGCTTCCCTGTTATTTCTCATTGAATTTTGTGACAGGGCGTCACCAAGTAGCTGCTCAAACTTTGCAGGGTGACTCTGGCTTTATCAAAATAGCATTTGTCAACTgagaaaaaaactgtcaaaagggCATCATTAAATTAAAACACTCATAAAGTTATTCAGTGTGAGCGGTAATTATTTGCCAAGCAGAAGTACGTGACCCAACTGATTTCATGCCAAGAAGTGTATTCTAACTTTAAGGCTTTACACTATATGGTTGGATAATTCATAAACAACATAGAATGCTTGGGGAAAATAGAACAAAGTGTGGACTGTATTTGGATTCAATTTACACCTGTGCAAGCGCCCTATgcttactgtttttattttgtatttaacacatttttcaGAGGGTTGGTCAGGACTTCCTGTGCAATATACTTTATTACTGTATCAAGAATAAATCTGAGAACATtacatttgtcattttaaa

Function

symbol description
klhdc3 Predicted to enable chromatin binding activity. Predicted to be active in cytoplasm. Orthologous to human KLHDC3 (kelch domain containing 3).

NR:

description
PREDICTED: kelch domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266559 False 436 lncRNA 0.50 2 23818985 23821177
XM_039784197.1 True 4769 mRNA 0.43 11 23818914 23851605

Neighbor

gene id symbol gene type direction distance location
ntpcr ntpcr,LOC103137650 coding upstream 48494 23766603 ~ 23770420 (+)
map10 NA coding upstream 53532 23762408 ~ 23765382 (+)
tsnax tsnax coding upstream 261071 23549140 ~ 23557843 (+)
gpr137ba gpr137b,LOC104924458,LOC103372484 coding upstream 324747 23488234 ~ 23494167 (+)
LOC120547587 ggps1,LOC102790345 coding upstream 467193 23337381 ~ 23351721 (+)
npas4l LOC101471891 coding downstream 4110 23855715 ~ 23860867 (+)
zmp:0000000755 LOC100695905,LOC101469954,LOC102307746,LOC103371009 coding downstream 211150 24062755 ~ 24122075 (+)
klc1b klc4,LOC102306811 coding downstream 279179 24130784 ~ 24160603 (+)
ptk7b ptk7 coding downstream 360367 24211972 ~ 24245841 (+)
srfb srf coding downstream 396593 24248198 ~ 24268024 (+)
G196195 NA non-coding upstream 275076 23543607 ~ 23543838 (+)
G196184 NA non-coding upstream 285855 23497168 ~ 23533059 (+)
G196174 NA non-coding upstream 348470 23467294 ~ 23470444 (+)
G196140 NA non-coding upstream 464573 23353972 ~ 23354341 (+)
G196124 NA non-coding upstream 557859 23258136 ~ 23261055 (+)
LOC120548378 NA non-coding downstream 18939 23870544 ~ 23874163 (+)
G196328 NA non-coding downstream 199584 24051189 ~ 24124149 (+)
G196336 NA non-coding downstream 309008 24160613 ~ 24162215 (+)
G196337 NA non-coding downstream 312595 24164200 ~ 24164631 (+)
G196332 NA non-coding downstream 416668 24268273 ~ 24270052 (+)
disc1 disc1 other upstream 207577 23562283 ~ 23611337 (+)
tasp1 tasp1 other upstream 1126310 22647914 ~ 22692604 (+)
kif16bb NA other upstream 1634422 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 2303786 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 2486337 21318610 ~ 21332577 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 506321 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 516349 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 712945 24564550 ~ 24569167 (+)
dact2 dact2,LOC103391347 other downstream 1156869 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 1287442 25139047 ~ 25144254 (+)

Expression


Co-expression Network