G196439 (wdr11)


Basic Information

Item Value
gene id G196439
gene name wdr11
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24564550 ~ 24569167 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU266740
TAAAGCATTAGGATCAATGTACAAACAATGAACACAGAACAATGAAAAAAAGGCTCAACTTTTCTTTTGTTGATCTAATTAAAGCAGCGAGTGTTAATCACACTAGTGCCTAATCATAAGAGGCAGTGCGATACATGTTGCTTTCACAACACTGCATGACATGATTGGTGGAAGATACACAGCACCAGGTGAACTACGGCTGATTATCTGCTGGGTTGTGGGACTCTAAGCTGGCTCTCTATATAAGATCCTACAGTATGTTGGTGGAGCTATGTGAAATGGATCTACAGGAACATGTAGTCCCCCCCCACTGAAATAGGCCTGGGTTGCCATAGTGACACTGCCTAGGGGTTAACTGTTACACAAGAGAAACAGCACTGACGTGTTTATgaaacacaataacacacttAAAAAGGTCCTGTGGATGGAGTTACGGTCTCGTTTCAGGACCACTAAACACGTTACAAGGGAATTAAACACACAATCACTAAAGTCTTTGCATTGTCATGCAGATGATTCTGATGATCAGTAGATAGCTCACTATGACAACATGAGGCAAAAGCAGAGCGGAGGAGATGTGGCAGCAAGTCTAAGCCgtttgctaaactgtgtgtcggGCTTTGTGATCGTGATGGGCAACAGTGGGAGCAGCACAgattatttgtttgtgtgtaaatgatCCTAAAGAGTTGCAACACATTTTGACAGCTCTTATTGTAATACGCACACACCAGACAACAACCTCATTATACAAAGATCAAAGAATACAGAGAGAAAACTATCCTCTCAAGTCTTCCTAAAAGTAGAAAATTAAAAATTCCATTTGGATGGAATGGATTACCCAGCATATATTCAACTGGACTCTGCACAAGCTAATTAAATGGCGTCACTCGGGTGGCAGCAGTCAGATTCCTCTCCCTTCTGTGCTCTGGGAGATGAGATAATATACTAATACGTATCTAATAAGCGCAGAGTGACCTGGCTAATTTTACTGCCATCCGACAGTTACAGCTGCAGAGGCTGGCGCAGCAGCAGGCTTTTGGTGAGTCAATTACACAGCACCACCTGCTGCGTATGTACACAACGGTCAGTCTGTTATGTGTCTGTCTAGAGCAATATTGTCTCTTGTCTCTGTTACAaggagggtaaaaaaaaaaggtatcatCCAAATGATGCAGTGTTTTTGGTTAAATCAAGAGTGCAACAAAAATCATTTTGGAATTCAGTCATTAAGTAGACGTGGATTAATAGTGAAATAGGGAACATTATTTTGGGATAAATGCATTCTGCCACATTTAATCTCAGCAGCAAAAAGGCTAATTAAACCTGTAGAGCTACAGCAATACTTTGAAGTTATTATTACAGGCACACAAAATAAAGCTTAACAAgcaaccattaaaaaaaaatctcatgaGTTAAATTCATtaatcaacaaaaacacagactgtTATCAACTATGTCAACTTCACTTGTTGGAGGGGGGGAAtcagtgtgttttcttttggggatgttgcatgcatacacatatgtgcacaaacacacactggtcaTACCAACCATTAAGAAAAGTCAAACTCGCTACAGACACAGACTTCAGTGACGGACTGGCAACTTCACATGGAGAAATCTCCTCATATCTCCTCTCTTCTCATGACGTGGAGATGATGATCATGATTCCCCCGTGATGCCGACACAGTTAATACACAACGGTCACGTTAttgaagttagaacgaatggcCGCCCCTTGATTTGTACCAAAGAGTATGTCAACCGTTCTCTTCCAAACCTCCCGTCTTTCCGGGGTCACTCGGTGCTATTCTGGCTCAGCTCGACTCCCTCTTCGCCAGGAATGGCTTCTGGCACGCTTCCCTCTCCCTGGAACAGCTCCTCCATCAGCTGCTCCCCAGCGCTGCCGGCCCGTGATGCCCACAGAGCAGCGCCCTCTCGCAGGCCCAGTGAGCGCAGCATCCGTGCATACTCCAAAAATACAGATTTGATAATGGAAGAGTCGTTGGCCTCCATCACCCCGTACTTCAGACAGGCTTCAATGAAGAGGGCGGCGCGATCAAAGTGCCTCA

Function

symbol description
wdr11 Acts upstream of or within cilium assembly and neural crest cell migration. Located in axoneme. Is expressed in olfactory bulb. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 14 with or without anosmia. Orthologous to human WDR11 (WD repeat domain 11).

NR:

description
PREDICTED: WD repeat-containing protein 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266740 True 2078 TUCP 0.44 2 24564550 24569167

Neighbor

gene id symbol gene type direction distance location
fgfr2 fgfr2,LOC102787384 coding upstream 70147 24454868 ~ 24494403 (+)
habp2 NA coding upstream 224366 24336122 ~ 24340184 (+)
LOC120548489 LOC101469311,LOC104948545,LOC103376395,LOC102786201,LOC102303134 coding upstream 228528 24331872 ~ 24336022 (+)
ablim1a ablim1,LOC102784938,LOC102304155 coding upstream 235309 24284646 ~ 24329241 (+)
srfb srf coding upstream 296526 24248198 ~ 24268024 (+)
LOC120548496 cdh23,LOC107989583 coding downstream 173759 24742926 ~ 24840747 (+)
cdh23 cdh23 coding downstream 298093 24867260 ~ 24944419 (+)
smoc2 smoc2 coding downstream 385545 24954712 ~ 24976820 (+)
lrrfip2 lrrfip2,LOC102790484,LOC103477154 coding downstream 464305 25033472 ~ 25054947 (+)
fam83ha NA coding downstream 506047 25075214 ~ 25084770 (+)
G196332 NA non-coding upstream 294498 24268273 ~ 24270052 (+)
G196337 NA non-coding upstream 399919 24164200 ~ 24164631 (+)
G196336 NA non-coding upstream 402335 24160613 ~ 24162215 (+)
G196328 NA non-coding upstream 440401 24051189 ~ 24124149 (+)
LOC120548378 NA non-coding upstream 690387 23870544 ~ 23874163 (+)
G196454 NA non-coding downstream 70247 24639414 ~ 24639857 (+)
G196457 NA non-coding downstream 71532 24640699 ~ 24642057 (+)
G196475 NA non-coding downstream 274276 24843443 ~ 24843852 (+)
G196476 NA non-coding downstream 277947 24847114 ~ 24847690 (+)
G196481 NA non-coding downstream 304635 24873802 ~ 24913468 (+)
LOC120548495 ate1 other upstream 138048 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 196951 24357926 ~ 24367599 (+)
klhdc3 klhdc3 other upstream 712945 23818914 ~ 23851605 (+)
disc1 disc1 other upstream 953213 23562283 ~ 23611337 (+)
tasp1 tasp1 other upstream 1871946 22647914 ~ 22692604 (+)
dact2 dact2,LOC103391347 other downstream 439307 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 569880 25139047 ~ 25144254 (+)
LOC120548229 rab11fip2 other downstream 912664 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 1025329 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 1044240 25613407 ~ 25620675 (+)

Expression


Co-expression Network