G196454


Basic Information

Item Value
gene id G196454
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24639414 ~ 24639857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU266756
TCGCGAAACCTCGAGGGTAAGTGCGccccaccaaagtggaagaatcccgtctggattggcaagaaagtctcaaaacctataggaaggccttaagaaaagccagatcagactattactcttcactaatagaagaaaataagaacaacccaaggtttcttttcagcactgtagccaggctgacagacagtcatagctctactgagccatctattcctctagctctgagtagtgatgacttcatgagcttcttcaatgataaaattataacaattagagataaaattaatcaccttttgccctcaacttctaacagttcatctttaaatacaggaccgctagaacgaacgactagtccggacatatacttagactgcttttatcctatagaccttcaacaattaatgttaaagatatcctcagctaagccatctacctgtctcttgg

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU266756 True 444 lncRNA 0.41 1 24639414 24639857

Neighbor

gene id symbol gene type direction distance location
fgfr2 fgfr2,LOC102787384 coding upstream 145011 24454868 ~ 24494403 (+)
habp2 NA coding upstream 299230 24336122 ~ 24340184 (+)
LOC120548489 LOC101469311,LOC104948545,LOC103376395,LOC102786201,LOC102303134 coding upstream 303392 24331872 ~ 24336022 (+)
ablim1a ablim1,LOC102784938,LOC102304155 coding upstream 310173 24284646 ~ 24329241 (+)
srfb srf coding upstream 371390 24248198 ~ 24268024 (+)
LOC120548496 cdh23,LOC107989583 coding downstream 103069 24742926 ~ 24840747 (+)
cdh23 cdh23 coding downstream 227403 24867260 ~ 24944419 (+)
smoc2 smoc2 coding downstream 314855 24954712 ~ 24976820 (+)
lrrfip2 lrrfip2,LOC102790484,LOC103477154 coding downstream 393615 25033472 ~ 25054947 (+)
fam83ha NA coding downstream 435357 25075214 ~ 25084770 (+)
G196332 NA non-coding upstream 369362 24268273 ~ 24270052 (+)
G196337 NA non-coding upstream 474783 24164200 ~ 24164631 (+)
G196336 NA non-coding upstream 477199 24160613 ~ 24162215 (+)
G196328 NA non-coding upstream 515265 24051189 ~ 24124149 (+)
LOC120548378 NA non-coding upstream 765251 23870544 ~ 23874163 (+)
G196457 NA non-coding downstream 842 24640699 ~ 24642057 (+)
G196475 NA non-coding downstream 203586 24843443 ~ 24843852 (+)
G196476 NA non-coding downstream 207257 24847114 ~ 24847690 (+)
G196481 NA non-coding downstream 233945 24873802 ~ 24913468 (+)
G196485 eif3l non-coding downstream 307981 24947838 ~ 24949032 (+)
G196439 wdr11 other upstream 70247 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 212912 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 271815 24357926 ~ 24367599 (+)
klhdc3 klhdc3 other upstream 787809 23818914 ~ 23851605 (+)
disc1 disc1 other upstream 1028077 23562283 ~ 23611337 (+)
dact2 dact2,LOC103391347 other downstream 368617 25008474 ~ 25013249 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other downstream 499190 25139047 ~ 25144254 (+)
LOC120548229 rab11fip2 other downstream 841974 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 954639 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 973550 25613407 ~ 25620675 (+)

Expression


Co-expression Network