cacul1 (cacul1,LOC103374658,LOC102794354)



Basic Information


Item Value
gene id cacul1
gene name cacul1,LOC103374658,LOC102794354
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25139047 ~ 25144254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU266891
AGACTTTCTATTGCTGCTAATAATACTGTCCATGTGGTAATACTACAACTCCCTCAGTTTCACCCACTGTGTCTGTAACCAAGTCACTCAACACAAATGAGTGTGGAAAGAAATGAGAACAAGGGCAACTAAGTCATTGACCTCAACTATGATTCCCTTCTTCATCTTGCCTCTACTGTGTTGGTAAACCGGATTGTATTTTCCCGTTACGCCAAAGAGGATTTGCAATTTCttttgttattcttttttttaatataaactgCATTGGATTTAGGCTGACCTTGTTATTGTTGTATACTCTCTGATTCACTGagccatttaatttttttttatactagcACGTTATGAGCTTTAGTTGACCTGTTTGTTAGGCTTGAGTCAAATTCTAACTTTAAATATCCCTTGTCTTTTTTAGCCTTGCATGTAGGATTGGCAGGGATTGCCATGTAGGACATTACACTGTTTGCCAGAAAGCTTAAACAACCACAGAATAGTGTTTGACAATTTCCTTATTTacctttttagtttgtttgactgcTTCATGGATTTTACAGAAAGAATGATTAAGCCAATATTGTTTGGCCCCAGTCTGGCGTACTTGTGCATTAAATGTTCCTAACATGCAAATCCTGATAATGATGTAAATAACTTTTGGTGTTTGCATAGTGGTCAGTATACACTAACTTTTTTTCACAGatgcatttttgttaaaaaaaatatattattatagtatttgATACAAGTCCTACACTGTTTTAAGTGTAAATAGATGCTCAGGCTTGCTTTTCGTTTCCCTCTGTGGGTCTTGAAAATGGTTCTCATTGTCTTTCCAATAAACTAATTTCATTATTCATGGGACACGGAGGTGATTGTGTTTTTCACTATTCAAGATTTGAAATCTGGGTCTTGAAAAAATGTTCTCTTAAAGTAGGCATTATGACAAACCTAAAGAAGAACAAACACTGGATGTACTATGTTACTTGCTGAGATATCCCTCTTTCTCTTACATCCTGCAAAAATATCCATGTTAAAACAACTAAACAACTGTGAATAAACTTCCACTTGGCT
>XM_039784767.1
CTGATTTCTCTCAGCTGTCCGGTTATACGACGTGTCGTAAAATCCAGTTAACAGCAAAAACGAGATGGACACCACCAAAGACgactgacagtttttttttgacTTTATCCCTAATAGTTATCTGAAATGTTTATGTAGTGGCGCCAGGCTTCAGCTCACAGAAGCGGTTGTGAAAATGGAAGCCATGGAAGATGACAGTTTGGATATAAAAGACGACCATAACCACAACTATTGTGcgagcagcagtagtagtagtagtagtagtggtagtagtagtaaagTCCGCACCTATCTGAGAAGCCAGTTGTCGGTTGTAACAACTGTCCCGCAACCTGCCGGTCCACCGGTGCCGGGTGGAGAACCGGGGACTCGACGAGGGAAACTGTGGTCCGGCAGCACCGGGGGGTCAAAGTTAATGGACTCGGATTCAGGCAGCGAGAGCAGCGAAGTCAGCGAGACTGACTGCACGGCTCCGCCACCCTCTGTTGAGGGAAATCTCCCCCTCGATTCTAACGTTACTTCCAAGTTCCTTCTGAATGCAATGGCTGTAGAAGACTACCGGAAAAACCACTGGCCAAACCTGGAGAAGGCAATTGACCGTCTTCTGATTCAGAATCCCACGGACCACATCTCTGTTTCTTATGCACAGATATACAGTTACGTCTACAAGTGTGTTTGTCAGCAGCACTCAGAGCTGCTCTACAATGATTTgacattaaaaataacaaaccaCCTGGAACAGGTTTCCACCCATCTACAAGCCAGACCACCCGAGGACTTCATTGAGAACTTTAATGTTGCGCTGACCCAATACACAGCTTCCCTTCAATGTATAGTTCCTGTATTTATGTACTTGAACAAGTTCTACATCGAGTCGAAGCTGAACAGAGACCTAAGAGAGGACCTGATGAAGCTGTTTGCTGATCACGTCGCAGAAATACATGTGAACACACTGATGCctcttcttatcaaagcTCATTCCATGCCGTTTCAAGTGCAGCCATCTACAATGGCCAGTGTGGTTAAAGGCCTCTACAGCCTCCGTCCAGACTGGGCCCAGTTAGCCCCGGATCTCTTCTCTGGGTTTATTCCCCAGATCAACCCTCCTGCTGTGGAGTCTCTGCTTCCTGACTACGCCGCTCATGACCAGAAGTTGCAGATGGAGCTCTCCATGAACGGCTTCCCACGaggtGACCAGTCTCGCAAACGGGCCAGCGACGACTCCTGATAGCAGAGCCGGCGTCACCAGATTGGTTGCAGAACTATTTACTGTGCCTCCTACATCTTTCTCACGAGTTGACCCACTGCACTAGGTACAATGTTGACAATGTGTCAGTTTCATCTCTCTCGACTCAGTCACAAATCACTGTGAACAACAAAAGGGTTGTTGAGCAGCTTAATCTTacagcactaaaaaaaaaacaaaaaaaaaacacagacacagacttcCATTATGGTGCTTTCCTGTGTGATTATGATGCATCCAGCTTCAGTATTTGTGGGATGCTGCTGTGTGCTCTGAGATGGGGTTCTTGATGTTCTCCTCATTTTGAAGAGTGCCTCCATGGTGCCTTCTGATTGGATATCCTCATGACGGATAGGCTGATGATGAGTATTTCATTCCTAACCTTTAACatggaagtgtcttttttttttttttttttttttttatagactgGGCTAATCGAGACTTTCTATTGCTGCTAATAATACTGTCCATGTGGTAATACTACAACTCCCTCAGTTTCACCCACTGTGTCTGTAACCAAGTCACTCAACACAAATGAGTGTGGAAAGAAATGAGAACAAGGGCAACTAAGTCATTGACCTCAACTATGATTCCCTTCTTCATCTTGCCTCTACTGTGTTGGTAAACCGGATTGTATTTTCCCGTTACGCCAAAGAGGATTTGCAATTTCttttgttattcttttttttaatataaactgCATTGGATTTAGGCTGACCTTGTTATTGTTGTATACTCTCTGATTCACTGagccatttaatttttttttatactagcACGTTATGAGCTTTAGTTGACCTGTTTGTTAGGCTTGAGTCAAATTCTAACTTTAAATATCCCTTGTCTTTTTTAGCCTTGCATGTAGGATTGGCAGGGATTGCCATGTAGGACATTACACTGTTTGCCAGAAAGCTTAAACAACCACAGAATAGTGTTTGACAATTTCCTTATTTacctttttagtttgtttgactgcTTCATGGATTTTACAGAAAGAATGATTAAGCCAATATTGTTTGGCCCCAGTCTGGCGTACTTGTGCATTAAATGTTCCTAACATGCAAATCCTGATAATGATGTAAATAACTTTTGGTGTTTGCATAGTGGTCAGTATACACTAACTTTTTTTCACAGatgcatttttgttaaaaaaaatatattattatagtatttgATACAAGTCCTACACTGTTTTAAGTGTAAATAGATGCTCAGGCTTGCTTTTCGTTTCCCTCTGTGGGTCTTGAAAATGGTTCTCATTGTCTTTCCAATAAACTAATTTCATTATTCATGGGACACGGAGGTGATTGTGTTTTTCACTATTCAAGATTTGAAATCTGGGTCTTGAAAAAATGTTCTCTTAAAGTAGGCATTATGACAAACCTAAAGAAGAACAAACACTGGATGTACTATGTTACTTGCTGAGATATCCCTCTTTCTCTTACATCCTGCAAAAATATCCATGTTAAAACAACTAAACAACTGTGAATAAACTTCCACTTGGCTCAAATTCTGTTCCAATAATCTA

Function


symbol description
cacul1 Predicted to enable ubiquitin protein ligase binding activity. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Orthologous to human CACUL1 (CDK2 associated cullin domain 1).

NR:

description
PREDICTED: CDK2-associated and cullin domain-containing protein 1-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU266891 False 1068 lncRNA 0.35 1 25143165 25144232
XM_039784767.1 True 2777 mRNA 0.42 8 25139047 25144254

Neighbor


gene id symbol gene type direction distance location
sirt1 sirt1 coding upstream 498 25131453 ~ 25138549 (+)
herc4 herc4 coding upstream 30967 25091886 ~ 25108080 (+)
LOC120547833 LOC103359796,LOC104940887,LOC102792006,LOC107088245,LOC101481961 coding upstream 49977 25085914 ~ 25089070 (+)
fam83ha NA coding upstream 54277 25075214 ~ 25084770 (+)
lrrfip2 lrrfip2,LOC102790484,LOC103477154 coding upstream 84100 25033472 ~ 25054947 (+)
mypn mypn coding downstream 303 25144557 ~ 25164629 (+)
atoh7 atoh7 coding downstream 23671 25167925 ~ 25169050 (+)
pkd2l1 pkd2l1,LOC104965266,LOC104921890,LOC103371634 coding downstream 26850 25171104 ~ 25177459 (+)
bag3 bag3 coding downstream 47565 25191819 ~ 25197871 (+)
inpp5f inpp5f coding downstream 54285 25198539 ~ 25213504 (+)
LOC120547601 NA non-coding upstream 19923 25111395 ~ 25119124 (+)
G196485 eif3l non-coding upstream 190015 24947838 ~ 24949032 (+)
G196481 NA non-coding upstream 225579 24873802 ~ 24913468 (+)
G196476 NA non-coding upstream 291357 24847114 ~ 24847690 (+)
G196475 NA non-coding upstream 295195 24843443 ~ 24843852 (+)
G196558 NA non-coding downstream 33905 25178159 ~ 25181813 (+)
G196563 NA non-coding downstream 45176 25189430 ~ 25189679 (+)
G196595 mcmbp non-coding downstream 75293 25219547 ~ 25219914 (+)
G196648 pdlim1 non-coding downstream 174012 25318266 ~ 25320869 (+)
G196690 NA non-coding downstream 283389 25427643 ~ 25433896 (+)
dact2 dact2,LOC103391347 other upstream 125798 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 569880 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 712545 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 771448 24357926 ~ 24367599 (+)
klhdc3 klhdc3 other upstream 1287442 23818914 ~ 23851605 (+)
LOC120548229 rab11fip2 other downstream 337577 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 450242 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 469153 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 672997 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1391030 26535284 ~ 26548760 (+)

Expression



Co-expression Network