G196648 (pdlim1)


Basic Information

Item Value
gene id G196648
gene name pdlim1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25318266 ~ 25320869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU267020
ATTAAGCTAAACATATTTATTTGGTAATggtattcaaatgttttttgctGCATGAAAGTCGGTCTATTTATTTCATAAAACTGTAGAAAACATTGTTTCCATGATTCAAAAGAACATACTGAACATGTATAAAGACAAATATTACTTAAACACAGTGGCTGTCTTTCAAATGAaaaattgattcttttttttttttagggagagaaaaaaaaatgaatgccaTCATCTCATTGTATTCATAGATTTTCCTTTCGTAGATGCCAAAGTCAATGTGCAAATCAACATTTTCAAAGATGTAGTTCTTTACTGCCCTGCCTACCAGTGACTGCACTGAAGCATAATGCGAGAGAAGACCATTTTATAGTATTAGGAGTAGCACGAGTTAAGTGTTGAATGTCTTAGATTATTTAAATGGCGTGCAGTCCGAGGTGGAGCTCAGCGGGCGCTCTACTTGGGGAAGACGGTGACCACGTCGTAGCCCTCAGGCGGGGTCACTCGCTCGCGTGCGTGCTTCTCACAATAAATCTGGTCCTCCACAAAGAAATGTCCCTTCTGTTTTAGGTTGATGTCGCAGTCTGTACAGGTGTAGCACTCGGGGTGACGGAACTTGTCCCTCAGCTTTACCACCATCCCCACAATCCCGGATCCACATTTGTCACAGGCAGGTAACTTCTCGGTGTTTCCCACTGATGATCCAATCTTTGTTGCGGGTGCTCTCACACTCCTGAACCCCGACGGTTTATCAGGGtcacctacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctttcacTAAGTCGACACATATATATAGTGCTTGTTTTCTTTAGGAATTTGTAATTTTAAGCAATGGCTTATcaggaacaaaaacaaaaaaaaacaaccccaaGAAATCTGTTGTCTAATGAAATGCAACAGATAAGTGTGTGccctgtggccgggttggctcagttggtggagcgggtgCGCACATATAGAgattagagctgaagatctttgcccgaacccgacgggacccgacgggacccgacgggttcgggcttaatttctattatttttcacgggctcgggccgggctcgggcttgcgcttcgggCTGCATGGTATatgagcggtcagctgatgcgtttcgattagcgtgaaaatggatcctgaggaggtgaaacggaggctggtctctgga

Function

symbol description
pdlim1 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be located in cytoskeleton. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including anterior axial hypoblast; digestive system; epidermis; nervous system; and yolk syncytial layer. Orthologous to human PDLIM1 (PDZ and LIM domain 1).

NR:

description
PREDICTED: PDZ and LIM domain protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267020 True 1314 lncRNA 0.45 2 25318266 25320869

Neighbor

gene id symbol gene type direction distance location
neurog3 NA coding upstream 133 25316395 ~ 25318133 (+)
pcbd1 pcbd1,LOC106525612 coding upstream 18820 25296263 ~ 25299446 (+)
LOC120548364 sec23ip coding upstream 85754 25222425 ~ 25232512 (+)
inpp5f inpp5f coding upstream 104762 25198539 ~ 25213504 (+)
bag3 bag3 coding upstream 120395 25191819 ~ 25197871 (+)
fam204a fam204a,LOC102781047 coding downstream 93124 25413993 ~ 25430909 (+)
dennd10 fam45a coding downstream 284597 25605466 ~ 25610518 (+)
vwc2 vwc2 coding downstream 357326 25678195 ~ 25707242 (+)
LOC120548498 NA coding downstream 401740 25722609 ~ 25734715 (+)
ikzf1 ikzf1,LOC102780616 coding downstream 419256 25740125 ~ 25758318 (+)
G196595 mcmbp non-coding upstream 98352 25219547 ~ 25219914 (+)
G196563 NA non-coding upstream 128587 25189430 ~ 25189679 (+)
G196558 NA non-coding upstream 136453 25178159 ~ 25181813 (+)
LOC120547601 NA non-coding upstream 199142 25111395 ~ 25119124 (+)
G196485 eif3l non-coding upstream 369234 24947838 ~ 24949032 (+)
G196690 NA non-coding downstream 106774 25427643 ~ 25433896 (+)
G196696 NA non-coding downstream 175799 25496668 ~ 25499280 (+)
LOC120548233 NA non-coding downstream 180660 25501529 ~ 25584577 (+)
G196782 NA non-coding downstream 458657 25779526 ~ 25794408 (+)
G196788 NA non-coding downstream 491346 25812215 ~ 25812441 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 174012 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 305017 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 749099 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 891764 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 950667 24357926 ~ 24367599 (+)
LOC120548229 rab11fip2 other downstream 160962 25481831 ~ 25495505 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 273627 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 292538 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 496382 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1214415 26535284 ~ 26548760 (+)

Expression


Co-expression Network