LOC120548229 (rab11fip2)


Basic Information

Item Value
gene id LOC120548229
gene name rab11fip2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25481831 ~ 25495505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU267084
GAGGTCTGTTGCACAACCGGCTGCCATCATCTACCCAGAAGCTGTTGAGGTGCAAATGCAAGCCAACTTCGTGTTTACCAGATGGTGTAGTGGCAGTTGTGTGCAGTTTGCTGAAAGACAGTCACGTGGTTGATAAGATGAAGCTGTGGTCGCTGTGTATACACTCAGTCTTCCACATACACAAGTCTCAAACTGTCCACCTGAACTACGAAACACATTCAGCGGCGGCAGCATCCGCTTTGTGTCCGAACCTCTTCTGTGCTACGGATCTGGAAGAACTCTGCTCTCCTCCCCAACAGCCTGAGTGATTCATGGGTTTTCTTAAAAAACGACTGGATGTTACGGTAAGAAGCTGCTGGAGTATCTGGGAGTCTGGTTTCTCTCTAGCTTACTGAGTCATGGGATTTCTCTTTTCTTCAAAAACAATGAACAAACGTACATTGCTGTTATCAGTTACTgactttttattctttattttatttgtgatgACTATCATTTAAGTATTTCGGACCAAGGGTCTCAGTCACTCACTGAACGTGATCATTTTACTCACTTTAAGTGCAATAATCATAACTTGAGTATCTTGCTTTATATTCTGCTGGTAATGTTCTTGTTTACATTTAATCACATCTTTGAGTCAAACTCGCCTCTTAATATTGATTTGATTCACTGGAAAAGCCTGGAGGTCTGTGTTCCAGCCTCCACCGATTGACCAGCCTTCATCTCCttcaaataactttttttttttttttttttttttttttgctgaagaTTGTATTAATGGTACTTATAGCTGCACATGTGGATACATGCTGAACAATCTTTATTTACAGATGTttcacatcatatttgtaaGGTACTTCATGGTTAAAACACTACTGTATCCCAATACCCCCTCCCTCACCACCCTTTCTACTATATTAACACTGTATAGTtagtacaaataaaataaaaaatctcctTGATAAGTATTCacgtattaaaggtcccatgacatgctgctttttggatgcttttatataggccttagtggtcccctaatactgtatctgaagtctctttcctgaaattcagccttggtgcagaattccagccactagagccaggcccacaatgagctttacttagtatgt
>XM_039784330.1
GCTCGCCGCTAGCCGACAAGCAGAAGTGAAAAGCAATGgatagcaacagcagcagcaggagcagcaacaacaacaacaacaacaacaactaacaTTAGCTGGCGTATTCCTCAGGAAACATCACATGAATGTATTTGTGAAGCCAGTCTCTGCTGACCTGCAGTGCTGAATGTCCTTCTAAGTGTCGATGAAAATGACCCCGAGATGACTCAACAGTGGCTTGGACATCTGTAATTTGACAAGATGAGGCTTGCTCAATTTGTCAGACTTGTCATTGCTTGTAATGATCGCAACTGTAGGCACATATACTGCACCGACATGGACAACAAACTAtagtgaattgttttttttgtttttgttttttgcgtTTTGCTATCACACTAACTACATACATTATCATTTAGTTTGTTTTGAATGGCTTTCAGTTGATAACCAGTGCTGATGATGTCACTGGGCGAGCAGTCTCAAAAGTGGTTTCCAACCCATGTCCAAGCCACTGTTCTTCAAGCAACCGGTTTACAGCCCAAGGGCAAAAATGGCACCAATGATGCCTACACTATCATCCAGCTGGGCAAAGAAAAGTACTCAACATCGGTGGCAGAGAAGACACTTACCCCTGTCTGGAAAGAGGAAGCCTCCTTTGAATTACCTGGTTTACTTTTGGAGGGCAACCCAGAAGTATATGAACTCTGCCTTATAGTGATGCATCGGTCCTTGGTTGGGATGGACAAGTTCCTGGGTCAAAGGTCCATCAACCTTAATGAAATCTTTGACAACAAGCAACGGAAGAAAACTGACTGGTATTCCTTGGAGTCCAAGCCggggaagaagaggaaagaacGAGGCCGCATTCAAGTCAGCATCCAGTTCATAAGGAACAACATGACGGCCAGCATGTTTGACCTCTCCATGAAGGAAAAGCCCCGCTCGCCTTTCTCCAAACTGAAGGACAAAATGAAGGGTCGCAAACATGACGGCGGCTTTAGTGACACATCGTCCGCCATCCTGCCTCGCTCTGCCATGTGCGACTCAGAGCCTAACCGTCAGTCCTTCGCCCCAGAACCACAACCCCAGCCTGAAACCAAGGTCAAGAGACCACTACTCACTGGGGCCCATAAACTCTCTGCAGCCCATTCTATGTCCGATCTCATTGGGACTCACTTTCGGCCCAAACTGGATTCCATGAACTCCATAGAAGAGAGTGGCGGCCCTCACAGGCGTTCCCAGAGCGAGGTGCCAGGCTACCAGGACGGCGAGGCACACAGTGACCCTTTCACTGATATCACTGACACCCTGCCACAGAAGTATGCCACGCTCCCACGCAACCGCAACCCATTTGAGGGGGAGCATGGGCAGCTGTGGGACCGGGCAGAGCGGaaggagaaaaaggagaagGTCAGCCTACTGGAACGCGTGACAGGGAAGAAGGAAGGCCGCAAGACCAACAATGGTGGGCGCTCGGGCAGCTCTGGAGATCTGCGTTCCCCCAACCCCTTTAGTGGAGACTCCCAAGCAGACACTAACCCGTTTATCTCCAACTACAAAGCCAGGGATAAAAAGTTAACAGGAAGTGAAGACATCACATTTGGCCATAAGAAGGAGGGCATCCATGGCAAGAAAAAGGAGGTGAAACAGGAAAGCGTGGCCGCCTACAGCAACTTGTCCTTTGAGGAAGTTGTGCAGGAACTCATCAAGCAGAAAGAAGTGGTGAAAAAGAAAGATGCCCACATCAGGGAGCTGGAAGACTACATCGATAACCTACTTGTGCGCGTCATGGAGGAGACGCCGAGCATTCTACGGAcaccatatgagccaaaaaagAAGGCGGGTAAACTTTCTAAAAAGTAGAAAGAAAGACGCAGGATCAAAAGTTACTAATGAGGGTTTAGCATGCATCAATATCACGTGGTAAAATAAGTGGGAACAAACGGGCTTGATCAAAGCCAAATTTCTGATTTGATTTATGTCTTTGCTGTAGAACATTTTTAGTTGAGGGATGTAGTTtttatatgctttttttttttcttttttcaatgttttgattgttttagTACACAGGTATTTTGCCCTCTCTGTTTAGCATTcctatatttacattttcaaattgctTTATCAATACTTGCCTCGGTGCGTTTTTAGGTAGTTAAACAGGATCAGCATCGATTGATTCGTGTCCGATCGAAtccatattattttttttttttttttggaaaaaaggtCAGGTTTAGCTATGTTTGTATGCACTTGTGAACCCACGGAGGTCTGTTGCACAACCGGCTGCCATCATCTACCCAGAAGCTGTTGAGGTGCAAATGCAAGCCAACTTCGTGTTTACCAGATGGTGTAGTGGCAGTTGTGTGCAGTTTGCTGAAAGACAGTCACGTGGTTGATAAGATGAAGCTGTGGTCGCTGTGTATACACTCAGTCTTCCACATACACAAGTCTCAAACTGTCCACCTGAACTACGAAACACATTCAGCGGCGGCAGCATCCGCTTTGTGTCCGAACCTCTTCTGTGCTACGGATCTGGAAGAACTCTGCTCTCCTCCCCAACAGCCTGAGTGATTCATGGGTTTTCTTAAAAAACGACTGGATGTTACGGTAAGAAGCTGCTGGAGTATCTGGGAGTCTGGTTTCTCTCTAGCTTACTGAGTCATGGGATTTCTCTTTTCTTCAAAAACAATGAACAAACGTACATTGCTGTTATCAGTTACTgactttttattctttattttatttgtgatgACTATCATTTAAGTATTTCGGACCAAGGGTCTCAGTCACTCACTGAACGTGATCATTTTACTCACTTTAAGTGCAATAATCATAACTTGAGTATCTTGCTTTATATTCTGCTGGTAATGTTCTTGTTTACATTTAATCACATCTTTGAGTCAAACTCGCCTCTTAATATTGATTTGATTCACTGGAAAAGCCTGGAGGTCTGTGTTCCAGCCTCCACCGATTGACCAGCCTTCATCTCCttcaaataactttttttttttttttttttttttttttgctgaagaTTGTATTAATGGTACTTATAGCTGCACATGTGGATACATGCTGAACAATCTTTATTTACAGATGTttcacatcatatttgtaaGGTACTTCATGGTTAAAACACTACTGTATCCCAATACCCCCTCCCTCACCACCCTTTCTACTATATTAACACTGTATAGTtagtacaaataaaataaaaaatctcctTGATAAGTA

Function

symbol description
rab11fip2 Acts upstream of or within neural crest cell migration. Predicted to be located in membrane. Predicted to be active in endosome and phagocytic cup. Is expressed in hindbrain; neural crest; and pharyngeal arch.

NR:

description
PREDICTED: rab11 family-interacting protein 2

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
TU267084 False 1133 lncRNA 0.40 1 25494373 25495505
XM_039784330.1 True 3228 mRNA 0.44 6 25481831 25495343

Neighbor

gene id symbol gene type direction distance location
fam204a fam204a,LOC102781047 coding upstream 50922 25413993 ~ 25430909 (+)
neurog3 NA coding upstream 163698 25316395 ~ 25318133 (+)
pcbd1 pcbd1,LOC106525612 coding upstream 182385 25296263 ~ 25299446 (+)
LOC120548364 sec23ip coding upstream 249319 25222425 ~ 25232512 (+)
inpp5f inpp5f coding upstream 268327 25198539 ~ 25213504 (+)
dennd10 fam45a coding downstream 109961 25605466 ~ 25610518 (+)
vwc2 vwc2 coding downstream 182690 25678195 ~ 25707242 (+)
LOC120548498 NA coding downstream 227104 25722609 ~ 25734715 (+)
ikzf1 ikzf1,LOC102780616 coding downstream 244620 25740125 ~ 25758318 (+)
ttl ttl coding downstream 274142 25769647 ~ 25778043 (+)
G196690 NA non-coding upstream 47935 25427643 ~ 25433896 (+)
G196648 pdlim1 non-coding upstream 160962 25318266 ~ 25320869 (+)
G196595 mcmbp non-coding upstream 261917 25219547 ~ 25219914 (+)
G196563 NA non-coding upstream 292152 25189430 ~ 25189679 (+)
G196558 NA non-coding upstream 300018 25178159 ~ 25181813 (+)
G196696 NA non-coding downstream 1163 25496668 ~ 25499280 (+)
LOC120548233 NA non-coding downstream 6024 25501529 ~ 25584577 (+)
G196782 NA non-coding downstream 284021 25779526 ~ 25794408 (+)
G196788 NA non-coding downstream 316710 25812215 ~ 25812441 (+)
G196841 pex13 non-coding downstream 409215 25904720 ~ 25907869 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 337577 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 468582 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 912664 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 1055329 24367954 ~ 24426502 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other upstream 1114232 24357926 ~ 24367599 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other downstream 98991 25594496 ~ 25674906 (+)
prdx3 prdx3 other downstream 117902 25613407 ~ 25620675 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 321746 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 1039779 26535284 ~ 26548760 (+)
G197053 NA other downstream 1167654 26663159 ~ 26663785 (+)

Expression


Co-expression Network