prdx3 (prdx3)


Basic Information

Item Value
gene id prdx3
gene name prdx3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25613407 ~ 25620675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU267128
CTTTATATTTAGGTTCTCTCCACCTCCAAGAAGACTGCGGGCCTCCTGTATTTCAGCCTGAAGAGAGCAGTATCAATAGTTAAACAGCATTTATTTTCTACTCCTCTCACCCTCGCAGAATAAGATCACTGTAGTGACTGCTAGACTTACATCAGAGGAAAGCAGGTGGCGCTACTGGGAGCACGTGCGTAAATGACGCAATAACCTGCTCAAACCTCTAACCGCCCTCCTCTGTCATAATCCAAAATGGCAGCCACCATCGGAAGACTACTCAGGACCTCTGTAAGTGCAACCTAACATCATATTTGATATCGGCACTCTTTCTCCTTACTTCGCTAGGAAGGAATCAGTAACGGACTACTGTCGGTAGCAGGTCATGATGAGTAGTCTACTCTACACTGAGGCGCTGTTATGGTTATGTGTGTCGCACATTTAAAACCTCCAGTCCCGGTGACAAACCTCTGGTTCGCGGCCGCTGTTTTAGACCAATATGGTTCACAAGAAATATTCAATTCATTATGAGCAGAgcaagGGTTGCAGCAGGAGGGTTGGAAGTGAGAGCAGCCTGTCAGCATGGATCATCTGGGGCTGCAAGAATCCTCACGGCTCCTCCACTTCAGAGAGCCTGCTTCTCTACCAGCACCTCCAGATGGAGCCCTGCGGTCACTCAGCCTGCTCCAGCTTTTAAGGCCACAGCTGTCCACAATGGGGAGTTCAAGGAGATGAGCCTCGCTGATTTCAAAGGCAAATACCTGGTCCTCTTCTTCTACCCACTGGATTTCACCTTTGTGTGTCCAACAGAGATCATCTCATTCAGCGACAAGGCCAGTGAGTTCCATGACATAAACTGTGAggtggtgggtgtgtctgtggACTCTCACTTCACCCACCTGGCATGGATCAACACCCCCCGCAAGTATCTAACAGGTATTGTTTGATGGTGTTCTGTCAGACTGGAGGCTTGGGCAACATCCACATCCCCCTGCTGTCTGACCTCAACAAGCAGATCTCTAGAGACTATGGCGTGCTGCTGGAGGATCCCGGCATTGCACTGAGgGGCTTGTTTGTCATTGATCCCAACGGTGTGGTGAGACACATGAGCGTGAATGACCTTCCGGTGGGCCGTTGTGTTCAAGAGACGCTTCGCTTGGTGAAGGCCTTCCAGTTTGTGGAGACTCACGGTGAGGTGTGTCCGGCCAGCTGGACCCCCGAGTCCCCAACGATCAAACCAACACCAGAAGGATCCAAGGAGTACTTTGAAAAAGTCAACTGAAAAAGGCAAAGTTCAAAACTCGTACacctaaaaataaatgtatacttAGTTTACAGTTTGTAAGTTGTGTTTACTCATGCACAGCTAAATACaccaataataaatatattcttCATAAATGGCAGCTGTGTTTTTGATTAATGTGCCGAT
>XM_039784338.1
TATATTTTATACAGGTGGCGCTACTGGGAGCACGTGCGTAAATGACGCAATAACCTGCTCAAACCTCTAACCGCCCTCCTCTGTCATAATCCAAAATGGCAGCCACCATCGGAAGACTACTCAGGACCTCTgcaagGGTTGCAGCAGGAGGGTTGGAAGTGAGAGCAGCCTGTCAGCATGGATCATCTGGGGCTGCAAGAATCCTCACGGCTCCTCCACTTCAGAGAGCCTGCTTCTCTACCAGCACCTCCAGATGGAGCCCTGCGGTCACTCAGCCTGCTCCAGCTTTTAAGGCCACAGCTGTCCACAATGGGGAGTTCAAGGAGATGAGCCTCGCTGATTTCAAAGGCAAATACCTGGTCCTCTTCTTCTACCCACTGGATTTCACCTTTGTGTGTCCAACAGAGATCATCTCATTCAGCGACAAGGCCAGTGAGTTCCATGACATAAACTGTGAggtggtgggtgtgtctgtggACTCTCACTTCACCCACCTGGCATGGATCAACACCCCCCGCAAGACTGGAGGCTTGGGCAACATCCACATCCCCCTGCTGTCTGACCTCAACAAGCAGATCTCTAGAGACTATGGCGTGCTGCTGGAGGATCCCGGCATTGCACTGAGgGGCTTGTTTGTCATTGATCCCAACGGTGTGGTGAGACACATGAGCGTGAATGACCTTCCGGTGGGCCGTTGTGTTCAAGAGACGCTTCGCTTGGTGAAGGCCTTCCAGTTTGTGGAGACTCACGGTGAGGTGTGTCCGGCCAGCTGGACCCCCGAGTCCCCAACGATCAAACCAACACCAGAAGGATCCAAGGAGTACTTTGAAAAAGTCAACTGAAAAAGGCAAAGTTCAAAACTCGTACacctaaaaataaatgtatacttAGTTTACAGTTTGTAAGTTGTGTTTACTCATGCACAGCTAAATACaccaataataaatatattcttCATAAATGGCA

Function

symbol description
prdx3 Predicted to enable thioredoxin peroxidase activity. Predicted to be involved in cell redox homeostasis and cellular response to oxidative stress. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; midbrain; and musculature system. Orthologous to human PRDX3 (peroxiredoxin 3).

NR:

description
thioredoxin-dependent peroxide reductase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267128 True 1423 TUCP 0.48 8 25613407 25620675
XM_039784338.1 False 966 mRNA 0.50 7 25614457 25620649

Neighbor

gene id symbol gene type direction distance location
dennd10 fam45a coding upstream 2889 25605466 ~ 25610518 (+)
fam204a fam204a,LOC102781047 coding upstream 182498 25413993 ~ 25430909 (+)
neurog3 NA coding upstream 295274 25316395 ~ 25318133 (+)
pcbd1 pcbd1,LOC106525612 coding upstream 313961 25296263 ~ 25299446 (+)
LOC120548364 sec23ip coding upstream 380895 25222425 ~ 25232512 (+)
vwc2 vwc2 coding downstream 57520 25678195 ~ 25707242 (+)
LOC120548498 NA coding downstream 101934 25722609 ~ 25734715 (+)
ikzf1 ikzf1,LOC102780616 coding downstream 119450 25740125 ~ 25758318 (+)
ttl ttl coding downstream 148972 25769647 ~ 25778043 (+)
xpo1b xpo1,LOC104925896,LOC103353500,LOC102296990,LOC103154927,LOC101480205,LOC106952069,LOC103477318 coding downstream 240156 25860831 ~ 25888074 (+)
LOC120548233 NA non-coding upstream 28830 25501529 ~ 25584577 (+)
G196696 NA non-coding upstream 114127 25496668 ~ 25499280 (+)
G196690 NA non-coding upstream 179511 25427643 ~ 25433896 (+)
G196648 pdlim1 non-coding upstream 292538 25318266 ~ 25320869 (+)
G196595 mcmbp non-coding upstream 393493 25219547 ~ 25219914 (+)
G196782 NA non-coding downstream 158851 25779526 ~ 25794408 (+)
G196788 NA non-coding downstream 191540 25812215 ~ 25812441 (+)
G196841 pex13 non-coding downstream 284045 25904720 ~ 25907869 (+)
G196836 NA non-coding downstream 291086 25911761 ~ 25939959 (+)
G196898 NA non-coding downstream 369793 25990468 ~ 25992621 (+)
LOC120548229 rab11fip2 other upstream 117902 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 469153 25139047 ~ 25144254 (+)
dact2 dact2,LOC103391347 other upstream 600158 25008474 ~ 25013249 (+)
G196439 wdr11 other upstream 1044240 24564550 ~ 24569167 (+)
LOC120548495 ate1 other upstream 1186905 24367954 ~ 24426502 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other downstream 196576 25817251 ~ 25826429 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 914609 26535284 ~ 26548760 (+)
G197053 NA other downstream 1042484 26663159 ~ 26663785 (+)
tmem254 NA other downstream 1105041 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 1253540 26874215 ~ 26953805 (+)

Expression


Co-expression Network