G196841 (pex13)


Basic Information

Item Value
gene id G196841
gene name pex13
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25904720 ~ 25907869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU267300
ttttttttaaattatttattttcaaaataatgatattaaatatttacaaaattaCTTTGTGACCAACGAATAGCTAACAATGTGCAAAACGAGCCCCATCCCATTCTGAATGAATCCAATCACATTTCACAAAGAAGACAATGCTGAGGACCAAGCAGCCTACAACTGAGagcaaaaagaaaatgacataattATATTATCAAACAAAATACCCTTGCTTTGTCTTTACACTGTATACAGCCGATTTATCGTGCACCGTATTACCTTAAACACTGAACTAATTCTTGTTATAGAGCAATCTCAATCTGGTACATCTTGAATCAGACATGATCTTAAAAAGAACAGCAGTGTACCATCTTTCTTGTACAAGCTCTGACTGAAAAAATGTAAGAATAACCTCCTAATTTGAAACACGCTGAACCTATGTATGGAAACCATTTTTGACCGTTAACCTTATCAGAAGGTCCAGATTGTGTTTGAGGATATAAAACCTTATAGATGAGCCTAGGAACTACTTTGAGCAATTCTTGACGAGGTCTATGGTGTTTTCCCCAAATATCTACTGTCGGCTGATTATTAGTTAAGCTTCAGAGTTAGACTGCAAACAAATACTGACTGAGCCAACCAGTGTTATGAACACACGTAGACTTGCATACACAGAAATCCATTCATGCACAAACATCACAGGTCAGTCTTCTCAGGGATGTTTAGCACTGTGCTGGAGGGCATACTGGGGTTGGATGTTCCCAGACTGAAGGAAGACGGTGTTTCTCTGTACACCGATTCTAGCAGTTCCTCTGGGGTGTAGGCTGAACCAAGGCCTGGAGTAAAGCCTTGGGCAGTATTTGACTCTGGGTGTGCAGTAAGGGGTGTCGGGGAGGCCTCTGGACTGGAGCTCAGCAGTTTCCAGATAAGGTAGGGTCCCCCCAATACTACAGCGAAAAACAGAAAGATTGGCCAGGACTTCACGGCCGGACCCTCCATCCCTGCTCCGTCCACTCTGGATGCACCTGTAGCCAGGGCATCGCTTGCACTGTCTGCCCACAAGTCGTCAACCTCAGCGTCTGACCTTCGCCCCAGCAGCCTCTGTAGCCGTCGGTAGAAGTAGCGCAAAGTGCGTACCAGAGCAAAGGCTGAGAAGACTCTGGTGAGGTGTGAACGCAGCCGCGTTAGGTGGTTGGCTACATCCAACACCGCACGGAAACTGTTGTACACAGCTGAAAAGGTGGCGTCCAGCATCATACTAACGGAGGTGAAGGCCTGGACAATGCTCTCGATAGACTGGAAGGCGCCGCGACTGCTCTCCTCCGCCTGTTGCACAAACCGGCTGGGGGCAACGTCTTCCGTGTTGGAGAGGCGGCTGTACCCTCCTCCCATGCCGTAGCCACCGCCACCATAGGTGTAGGGGCTGTAGCCCCCATACATGGAGCTCCCATAGGGGCTGTAAGAGGAGGTGAAAGAGCTGTAGGCCGGACGGTAAGCCTGCTGGATGGGACGAGGGGGCAACGGGGGCACCATCCTGGTCAGGACGGGAGGGCCTGCAGAAACAGAGGGGCCTGCAGCTGGTCCAAAGTTTGAAGATCTGTTtggtgagaagaaaaaaatcataggGATCGAATCATCTTTAGTGTTTCGTTATGTCATTTCTTTATGATTACAGAAAGCATGGGTGACATTTCAATTAGCCTGatgctaaactaaaactaaggcATTAATGATTCTGTGTGCCTATCCCTTTGGATTTGTTTCAACCTTAAACATTTTTACATGCCTCGAACGTGATCAAATT

Function

symbol description
pex13 Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be part of peroxisomal importomer complex. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 11A. Orthologous to human PEX13 (peroxisomal biogenesis factor 13).

NR:

description
PREDICTED: peroxisome biogenesis factor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267300 True 1789 lncRNA 0.47 2 25904720 25907869

Neighbor

gene id symbol gene type direction distance location
xpo1b xpo1,LOC104925896,LOC103353500,LOC102296990,LOC103154927,LOC101480205,LOC106952069,LOC103477318 coding upstream 16646 25860831 ~ 25888074 (+)
ttl ttl coding upstream 126677 25769647 ~ 25778043 (+)
ikzf1 ikzf1,LOC102780616 coding upstream 146402 25740125 ~ 25758318 (+)
LOC120548498 NA coding upstream 170005 25722609 ~ 25734715 (+)
vwc2 vwc2 coding upstream 197478 25678195 ~ 25707242 (+)
haao haao coding downstream 54486 25962355 ~ 25969516 (+)
hcar1-3 NA coding downstream 69588 25977457 ~ 25980437 (+)
trnai-uau_2 NA coding downstream 74876 25982745 ~ 25982838 (+)
plekhh2 plekhh2 coding downstream 506655 26414524 ~ 26476727 (+)
si:ch73-105b23.6 LOC104955877 coding downstream 587639 26495508 ~ 26521577 (+)
G196788 NA non-coding upstream 92279 25812215 ~ 25812441 (+)
G196782 NA non-coding upstream 110312 25779526 ~ 25794408 (+)
LOC120548233 NA non-coding upstream 320143 25501529 ~ 25584577 (+)
G196696 NA non-coding upstream 405440 25496668 ~ 25499280 (+)
G196690 NA non-coding upstream 470824 25427643 ~ 25433896 (+)
G196836 NA non-coding downstream 3892 25911761 ~ 25939959 (+)
G196898 NA non-coding downstream 82599 25990468 ~ 25992621 (+)
LOC120547661 NA non-coding downstream 116051 26023920 ~ 26069456 (+)
G196921 NA non-coding downstream 192623 26100492 ~ 26101022 (+)
LOC120548055 NA non-coding downstream 198664 26106533 ~ 26111175 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 78291 25817251 ~ 25826429 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 229814 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 284045 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 409215 25481831 ~ 25495505 (+)
cacul1 cacul1,LOC103374658,LOC102794354 other upstream 760466 25139047 ~ 25144254 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other downstream 627415 26535284 ~ 26548760 (+)
G197053 NA other downstream 755290 26663159 ~ 26663785 (+)
tmem254 NA other downstream 817847 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 966346 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 1018549 26926418 ~ 27109140 (+)

Expression


Co-expression Network