G197035 (LOC104925924,LOC104948680,LOC103376065)


Basic Information

Item Value
gene id G197035
gene name LOC104925924,LOC104948680,LOC103376065
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26624635 ~ 26627702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU267520
GGCATTCATGAAATCGCGTGTAAAAGACATTGGGAAAAGTATTTTAAATCTTTATTTGTTAGGTGTACTCCACAAGGTTTTTAGACATCCCGTTTCATGTAAAGAACTAAACATGGCTCAAGAGATTGTGTAGCTTGACATTGGCCCTACCATGTGTAGGTGGTTCACAGTTCAACACATGGAGCAGAGAACAAAACATGTTGACTTTTGATTTAAATTGCAGTGAAGAAAACGTGTAATAAGTAGGTCCGCTGACATGTAAGACTCACCCACAGTACTTactattaaagctatagtgtgtagtttctgtcgcccccgtgaggaattctaagtaatgacaacaaaactgtcgggcgcgtccacatgatataagccttccgtgatcgcgcacgcgcccccacccctcctccacacagctgctagtagccaaggaggacacggaggattaaaaaatacATGATGGACTCCtctcattatcttcactcgaggttctgcgcgcgaaagtcaccggacgactcaatcatagccatactgagaaatccagagagagttgtgtggagctgatagtcttaattagctttgtagcaactcatttggcaatggacGCTCATTAATACCAAaatgttacgcactaaagctttaatactAGCAGTGGATGTTGAGGAGAACCATATTGAAAGCAGTTTAAAGTATAATACATGTGTATAGGGTCTCTCCGATTTTGAGCTTGTGAAATGATTTTTCAGCAATAATTTATACACCTGTGAAAAACGGAATATTTGAATACAGATTGAAAACTGTGTGGGGAAACTCCCACACTGTGTATGACACTGAAGTTACTTTTACAGTCAAAATCAGGGCCAGAATTTGTACTTGGGACTTaaatgtgtgtctgcgtgtttaATCGCAGTGTGGTAACTTTGAGTGCTGACTTTGATTGCTGACAGTGAGACAGATGCAGTTGTTATGCTTTAAATCTGTACTCCGATATTCACAAAAGCACATCTTCACAGTCTGTGACGCCTCACCGCCAGGgttcaaaatgaactttttcATCCACCAGCCCAGCACTCAATatattaccattgtttttttgggctGGTGAGGGAAGCAAAACTACCAGCAACGTGCATATTTTACctgcatttggctggtggatggtgctaattttgaaccctgatcAGCAGTGATATCATTTGTGCACGCATTTGATTATAATTGTTTTCTATGCATTCACAAACTTGAATTTATTTGTGAGTTGTTACTACTTGCATAAGCTGATATGCAACCAGAGGCTGTGCGTTTGGAACTTCAGACTGTTTCTAGAAATGAAATGAGTTAACACTTTACTTAAAGAGCCCCTATCATGCTCTTTTGATTTGTCCTGTCTTTTAGTGTATTATatagttttttgtgtatgtaatagatgtataaggtacaaaaaaaactaatttcacTCTGaatggagctttctctcccacagacagcaTTTTTTTCTCGAATACATAAAAACACCTCGCCCATGTTGCTGTTTGAAATTCCACAATTtgtgatgtcactgattgagaATGCCAGCCTAGTTTATCATATGTGCTGCCCATAGGTGCTGCCTGAACGAGCACAGCCCCGAccagtggcttgtttgaatttggttgacctgtcacaacagagtgggccagctgaccaatcagagcagactgggcttctCGGCAGGATCGGGACACAGAAACGGAGCGTTTCAGGCAAAGGAACTGCAGCAATGAGAAACATAATATGAtgtttgaacatcaaagcatgtcaacctattctagtagaccccaatagtacaaatatgatgctgaaaaggagtataataggggctctttaaaatGAGTGagaatatgtgtgtgaatgtgaaacAAGGTGAAAAAGGACAGTGCATCATCACCTAATCCTCTGCAGCTAAATATAGATTaaaaatcattttaatgttatatttgactttttttttaaattggccTCTGTTACTTCTTAGCTCCAGTGTGAGGCTTGGTCTAGAGGCTGCATGGAGGCCAGAGAGAACATGGGCGAGGTGAGGTTGCTCCTCAGCGGGCTGTACCAGTCTTCATGCTGCCGCTGGGAGGCCGGCTGCGGTGGGACGCTGGGGCAGGGGCACTGGCCCACCGGGCCTGGGTGCCGGGAGTACGCCCCAGAGGGCAGCATGGGGGGGAGGCGGGGGATGTGAGCCAGGGGCTGGGTGTAGTACTGTCGAGCCATGCCGGACGGCTGAACGTGCATGCCTCCCAGCAGCGCCCTGTGGCCTGACATCACGCCCACTGGGAGAACTTTCTGGGAGGCCCGCTCCTGCTTCCGCTGTTTGGCTCTTCTGTTCTGAAACCAAACCTGCCGAGACAAGGACAGATTAGCTGGCCTGCACACCTCGATGCAAGTAAGACACCTGGCATTATAATGCTGTTCAAAAAGGGTGGGTTCAGCAAAAATGGGACATTTAAGCATCGCCTTGTGTTGCCATTGAAGCAAAACAACACTACTGATACTTCTACTACTGACACTACCACACCTGGTGTGTTCAGGGAAGGTGCACCCCCCAATGAATTTAACCccaaaaaagtgtttaaaagaaatataaattgTCCAAATATTGCAGACGTTTTAATAAAGCCATGTTGTCTCTgctcacatttcaaaataaaatgcacaatattatatttattttttcttaagCACTGTCCAACCACATGTTAGCAAAACTGAGACAGTGCTTTTAAGTAAGGTGGCGCACTTTATAATCATGTTTCTCACAGCATTTCTGCAATATTATACATTCAATTCAGTTATGGAGAACAGTGATAAGGTCATAGACAATATTGTAATTAAAGTGCAAAGTCAGGGTATTCAATTTGCAATGACAAAGCCAGTAAatgttcacatttgagaagctggagcagTGAGTGGTTCGATATGTTTGCTTGATAAAAGGGCagcccccctcactctgacatctctccatatatatataataataaatccacTCTTCAGTTGTACTTTTTCTAAATGtaataaagaca
>TU267521
GGCATTCATGAAATCGCGTGTAAAAGACATTGGGAAAAGTATTTTAAATCTTTATTTGTTAGGTGTACTCCACAAGGTTTTTAGACATCCCGTTTCATGTAAAGAACTAAACATGGCTCAAGAGATTGTGTAGCTTGACATTGGCCCTACCATGTGTAGGTGGTTCACAGTTCAACACATGGAGCAGAGAACAAAACATGTTGACTTTTGATTTAAATTGCAGTGAAGAAAACGTGTAATAAGTAGGTCCGCTGACATGTAAGACTCACCCACAGTACTTactattaaagctatagtgtgtagtttctgtcgcccccgtgaggaattctaagtaatgacaacaaaactgtcgggcgcgtccacatgatataagccttccgtgatcgcgcacgcgcccccacccctcctccacacagctgctagtagccaaggaggacacggaggattaaaaaatacATGATGGACTCCtctcattatcttcactcgaggttctgcgcgcgaaagtcaccggacgactcaatcatagccatactgagaaatccagagagagttgtgtggagctgatagtcttaattagctttgtagcaactcatttggcaatggacGCTCATTAATACCAAaatgttacgcactaaagctttaatactAGCAGTGGATGTTGAGGAGAACCATATTGAAAGCAGTTTAAAGTATAATACATGTGTATAGGGTCTCTCCGATTTTGAGCTTGTGAAATGATTTTTCAGCAATAATTTATACACCTGTGAAAAACGGAATATTTGAATACAGATTGAAAACTGTGTGGGGAAACTCCCACACTGTGTATGACACTGAAGTTACTTTTACAGTCAAAATCAGGGCCAGAATTTGTACTTGGGACTTaaatgtgtgtctgcgtgtttaATCGCAGTGTGGTAACTTTGAGTGCTGACTTTGATTGCTGACAGTGAGACAGATGCAGTTGTTATGCTTTAAATCTGTACTCCGATATTCACAAAAGCACATCTTCACAGTCTGTGACGCCTCACCGCCAGGgttcaaaatgaactttttcATCCACCAGCCCAGCACTCAATatattaccattgtttttttgggctGGTGAGGGAAGCAAAACTACCAGCAACGTGCATATTTTACctgcatttggctggtggatggtgctaattttgaaccctgatcAGCAGTGATATCATTTGTGCACGCATTTGATTATAATTGTTTTCTATGCATTCACAAACTTGAATTTATTTGTGAGTTGTTACTACTTGCATAAGCTGATATGCAACCAGAGGCTGTGCGTTTGGAACTTCAGACTGTTTCTAGAAATGAAATGAGTTAACACTTTACTTAAAGAGCCCCTATCATGCTCTTTTGATTTGTCCTGTCTTTTAGTGTATTATatagttttttgtgtatgtaatagatgtataaggtacaaaaaaaactaatttcacTCTGaatggagctttctctcccacagacagcaTTTTTTTCTCGAATACATAAAAACACCTCGCCCATGTTGCTGTTTGAAATTCCACAATTtgtgatgtcactgattgagaATGCCAGCCTAGTTTATCATATGTGCTGCCCATAGGTGCTGCCTGAACGAGCACAGCCCCGAccagtggcttgtttgaatttggttgacctgtcacaacagagtgggccagctgaccaatcagagcagactgggcttctCGGCAGGATCGGGACACAGAAACGGAGCGTTTCAGGCAAAGGAACTGCAGCAATGAGAAACATAATATGAtgtttgaacatcaaagcatgtcaacctattctagtagaccccaatagtacaaatatgatgctgaaaaggagtataataggggctctttaaaatGAGTGagaatatgtgtgtgaatgtgaaacAAGGTGAAAAAGGACAGTGCATCATCACCTAATCCTCTGCAGCTAAATATAGATTaaaaatcattttaatgttatatttgactttttttttaaattggccTCTGTTACTTCTTAGCTCCAGTGTGAGGCTTGGTCTAGAGGCTGCATGGAGGCCAGAGAGAACATGGGCGAGGTGAGGTTGCTCCTCAGCGGGCTGTACCAGTCTTCATGCTGCCGCTGGGAGGCCGGCTGCGGTGGGACGCTGGGGC

Function

NR:

description
Homeobox protein prophet of Pit-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267520 True 3068 lncRNA 0.43 1 26624635 26627702
TU267521 False 2147 lncRNA 0.42 1 26624635 26626781

Neighbor

gene id symbol gene type direction distance location
mcfd2 mcfd2 coding upstream 2065 26619417 ~ 26622570 (+)
calm2a calm1,LOC102778633,LOC102293206,LOC107396020 coding upstream 92909 26527783 ~ 26531726 (+)
si:ch73-105b23.6 LOC104955877 coding upstream 103058 26495508 ~ 26521577 (+)
plekhh2 plekhh2 coding upstream 147908 26414524 ~ 26476727 (+)
trnai-uau_2 NA coding upstream 641797 25982745 ~ 25982838 (+)
LOC120547700 plac9 coding downstream 130631 26758333 ~ 26767338 (+)
LOC120547537 NA coding downstream 237923 26865625 ~ 26873668 (+)
valopa valop,LOC104938804,LOC106940109,LOC107093123 coding downstream 549266 27176968 ~ 27206666 (+)
LOC120548504 kndc1 coding downstream 1180602 27808304 ~ 27878568 (+)
vox NA coding downstream 1258541 27886243 ~ 27887609 (+)
G197029 NA non-coding upstream 84500 26539844 ~ 26540135 (+)
G197027 NA non-coding upstream 91401 26533032 ~ 26533234 (+)
G196967 NA non-coding upstream 313349 26291118 ~ 26311286 (+)
LOC120548056 NA non-coding upstream 495104 26122891 ~ 26129531 (+)
G196935 NA non-coding upstream 506995 26117101 ~ 26117640 (+)
G197069 LOC103370964,LOC104925911,LOC102295618,LOC103148144 non-coding downstream 112555 26740257 ~ 26746085 (+)
G197084 nkx6-2,LOC102789131 non-coding downstream 437024 27064726 ~ 27104508 (+)
G197087 NA non-coding downstream 488264 27115966 ~ 27116514 (+)
G197089 NA non-coding downstream 514869 27142571 ~ 27142786 (+)
G197137 NA non-coding downstream 637577 27265279 ~ 27265508 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other upstream 75875 26535284 ~ 26548760 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 798206 25817251 ~ 25826429 (+)
zgc:110045 LOC102779765,LOC102305383,LOC100704767,LOC101482925,LOC102197868 other upstream 949729 25594496 ~ 25674906 (+)
prdx3 prdx3 other upstream 1003960 25613407 ~ 25620675 (+)
LOC120548229 rab11fip2 other upstream 1129130 25481831 ~ 25495505 (+)
G197053 NA other downstream 35457 26663159 ~ 26663785 (+)
tmem254 NA other downstream 98014 26725716 ~ 26735787 (+)
pwwp2b pwwp2b other downstream 246513 26874215 ~ 26953805 (+)
LOC120547882 inpp5a other downstream 298716 26926418 ~ 27109140 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other downstream 824248 27451950 ~ 27511592 (+)

Expression


Co-expression Network