G197084 (nkx6-2,LOC102789131)


Basic Information

Item Value
gene id G197084
gene name nkx6-2,LOC102789131
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 27064726 ~ 27104508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU267596
tttttttttttttttttttttttttttctttttttgcgtCTATACATGTGTGTGCCGGTACTGAATTGACAATTTGTAAAAAGCGGAGAAAAAGGGGGCCGACATTACTCTGCAGGAATAAAAACCCAAGCAGCAGAGAGCCTATAGTGTATATCTGAGAGAGGCAATAAGCGCGTCCGGGCTGCGGAGGGAGAAAGGCTGCCACGTTTCCACTGGTTGAAACAACATAACTTATtcagtaaaaaatatatacaatctCACGTACATGTTCATCTTTAGGCTACAGCACAAATCATTCATTCATCTCCAACCTGcgtccccccacccacccaccctcaAAAATGTCATTCTCTCGCCTTTTAGGACAGTGGATACCCTGGTTAAACTGAGCTTTAGAAGCGTCACAGGCCCCGTTTACACCTGCCATTTTAAACATGCGTCTGGGATCCGGATCAGAGTTGTGCTGCTAATAAATCACTTCTACTAAAAGCTTACAGTCACCTCCCAAAGATGCACGAAACAAACTGTTGCTTTTCTTGAAACCAAAATTGGATAAAGGCTGAATTTTATAACATGGTGCACTTTCTTCACTTCAGAATGAAAAAGGACTGGCAataatgtccttttttttttgtccgcaGATGAAAATATTATGAGTGCTGAAAACCAATTAAAAAGAACATCCAACGGTCTCGTTCAGAGTCAAATGAATGGCCATCCTGGCTTGTAAAGGTGACGGAGGCTGCTAATCTTGGCCAGAGGTGTAGCGGGAAATAATGTTAACAAGTGTCATGAATTACACTGCACGGGTAAAGCAAAGCACCATTACTTGTGgaataagtcacagtaataagCCCAACACTGATccggattgtgtgtgtgtgtgtgtgtatatatcataATGTGTTTACATTTACACCTGTTGTTTAAAACTCCAGTTGGATGCGTAAAAACAGATTTGCGTCGCCGAAACAATTTCCTGTCCCAATATTTCTGTCCTTTCACCTGACATGAACTTGTCATTATCAGTCTCGTCGAAGTCCATTGTTGACAGGAGTTTCATCTCCGTGTTTACAGTGTCTGTGAGTGGTGGGGTGGTTTGGATGCAGCCAAATGCGTCTCTGGCCATGTTTTGGTGAGCGCGTCTTCCGTGCGTCTTACTCGGTTTTTACGCATTTTTCTTGCTCTGTCAGAGCACAATGCGACCactccccccgccccccccccaccccccagtcGCATGTTCGCAGTGTCAGGTGGAAaggggattaaaaaaaataataataatgagtgCATCACAAGGTGTCCGAGCTGTTACTGCAGGGGCTGATCAGCGCCAGGTTGCTGGCCTTGTGCTTTTTCAACAGTCTCGTGATCTTTTCGTCGTCTGAGTTTGGGTCCAGGGGTTTGTTGTACTCGTCGTCGTCCTCGTTATCCGAGCTCTCCTTCATCTTCTCCGTCTCGGAGTCGTGCTTCTTCTTGGCCGTGGCCATTTCTGCTGCGTGTCTCTTCCGCCATTTGGTTCTTCTGTTCTGAAACCAAACCTgttgaggggggggggacacagaTGCGCACAGATGCTCAACAGGTCCACATGTGAACACGTAATGAACAGAAACGCTCCATTAAACTAATCACAACAGGTGTGTAAACCATCCTGTATACACTCAAAT

Function

symbol description
nkx6-2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation; regulation of myelination; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including negative regulation of transcription by RNA polymerase II; neurogenesis; and neuromuscular process controlling balance. Predicted to be part of chromatin. Predicted to be active in nucleus. Implicated in spastic ataxia 8.

NR:

description
PREDICTED: homeobox protein Nkx-6.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267596 True 1673 lncRNA 0.45 2 27064726 27104508

Neighbor

gene id symbol gene type direction distance location
LOC120547537 NA coding upstream 191058 26865625 ~ 26873668 (+)
LOC120547700 plac9 coding upstream 297388 26758333 ~ 26767338 (+)
mcfd2 mcfd2 coding upstream 442156 26619417 ~ 26622570 (+)
calm2a calm1,LOC102778633,LOC102293206,LOC107396020 coding upstream 533000 26527783 ~ 26531726 (+)
si:ch73-105b23.6 LOC104955877 coding upstream 543149 26495508 ~ 26521577 (+)
valopa valop,LOC104938804,LOC106940109,LOC107093123 coding downstream 72460 27176968 ~ 27206666 (+)
LOC120548504 kndc1 coding downstream 703796 27808304 ~ 27878568 (+)
vox NA coding downstream 781735 27886243 ~ 27887609 (+)
vent NA coding downstream 786942 27891450 ~ 27900204 (+)
blnk NA coding downstream 1127287 28231795 ~ 28275999 (+)
G197069 LOC103370964,LOC104925911,LOC102295618,LOC103148144 non-coding upstream 318641 26740257 ~ 26746085 (+)
G197035 LOC104925924,LOC104948680,LOC103376065 non-coding upstream 437024 26624635 ~ 26627702 (+)
G197029 NA non-coding upstream 524591 26539844 ~ 26540135 (+)
G197027 NA non-coding upstream 531492 26533032 ~ 26533234 (+)
G196967 NA non-coding upstream 753440 26291118 ~ 26311286 (+)
G197087 NA non-coding downstream 11458 27115966 ~ 27116514 (+)
G197089 NA non-coding downstream 38063 27142571 ~ 27142786 (+)
G197137 NA non-coding downstream 160771 27265279 ~ 27265508 (+)
G197143 NA non-coding downstream 194660 27299168 ~ 27299994 (+)
G197146 NA non-coding downstream 195602 27300110 ~ 27301368 (+)
pwwp2b pwwp2b other upstream 110921 26874215 ~ 26953805 (+)
tmem254 NA other upstream 328939 26725716 ~ 26735787 (+)
G197053 NA other upstream 400941 26663159 ~ 26663785 (+)
stpg4 LOC103353520,LOC101467386,LOC102793681,LOC102299197 other upstream 515966 26535284 ~ 26548760 (+)
LOC120548053 LOC103353497,LOC102790632,LOC102299158,LOC102194143,LOC101482614,LOC100706574 other upstream 1238297 25817251 ~ 25826429 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other downstream 347442 27451950 ~ 27511592 (+)
LOC120548047 adgra1,LOC103360772 other downstream 450420 27554928 ~ 27781041 (+)
ccnj ccnj,LOC102785723 other downstream 1189697 28294205 ~ 28302333 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other downstream 2008180 29112688 ~ 29177494 (+)
G197531 NA other downstream 2243917 29348425 ~ 29349928 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G680192 NA misc CI01180000 null 2693355 ~ 2695436 (+)