G197528 (LOC106513149,LOC101169589,LOC103370318)


Basic Information

Item Value
gene id G197528
gene name LOC106513149,LOC101169589,LOC103370318
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29315299 ~ 29347498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU268127
CATTATTGTATTAAGAGtaactttataaaaaaaatcaaaattaaCAAAGCGTTCGTAATAAAGTACCATTGGAGCGCCAAAAAGCATTCAGACATAAAATGTGATAAAGATGTCAACTAAGAAGACACttaacatttcaaaaacaaacaattctacattttaaaaagcatttaTTGATACCTCATTGACAGAGGGTGATGTAGTGTTGGCTGGCTAGCTAGAATTCCCCTTAATCATTTGTAATTTCATTCCtcaaacagaaatacaaaacaatGCAAGTTAACTGAAGTAGTAGTACAAAAACGcacaacaaacagaaaaaatgtAAAGTACCATACGTTGCCAAAATAACAAATGTTACAGTGCAACTGCAAGCATCTGTGTATGTATCCAGTGTCACCCACTAAGCTACAACACAGGCTGAAATATCTGCACAAAATTCATAAATCAACCATGAGCCAGATAATTTGGCTCCAAGACTCAATGAacagaaaataaagagaaaacagTCTTTAGCCTAGATTTAAACAGGTATCTAAAAGACAGACACAGCTTAACCATTCAAAATGGGAAactcatttattaaaaaaaaaaaaataacatcctTTGGCTTTTGAGCAGTGTCTGTTATTGCTAACAGGACTGTACTGACAACAATAAACCGTCAATACCCTCAAACCGAATAAAACCCATCGTTGGGTGTACTGGTTGTACTATACTTTCACTGGGATGCAGTCCTTTATCAGTCCATGCTTTAATCAATCAAACATACATTCAGCCATATGTGCATCTGCTTATCCAAATTATTTGATCTTTGGTACATTTACAGCATGTCATCATCTTCTCCTCCTCCGTACATGTCTGCCAATTTCTTGAAGCGGGGTCCCCACTCATTGAGGCAGTTGTAGTCCTGGTCTCCGCTGCTCGATGAGTTCAGAGAGGAGAGGCTTCCTGCATCAGAGCCACCCCCTTCATAATCAAACACCAGCAGGGAGTCATAGGGAGGTGCTGTTGGGTCGTTGTCGGCTGCCTTCAGGTTATCATCAATGAAGTTGCCAATTTCCTCTGGGTTGGCGGGGCGAGGCCGGTACTGAGGAGCCGGCATGAAGTTCGGCACTACATCGTTTCTGAACACTTCGGGCCGGTTGTCCAAACCACGGTGGAGAACGCTCAGATCAAAGTCCTGATCGTCTTCCCCACCTCCCTCTTCATCATAGTAATAAATGTTGTCTCTGATATCGTCGTCTTGCAGTAGAGGTTCCTTCTTTTCTCCTCGTCTCCGTCTTGCaaatagcagcagcagcaacaccaGCACTGAACATACAGAGCACAAAGCTTAATACAACACACCCATGATTAAGTCATCACAAgactagtctcactttgcctgGCCTTCCTCCACCACGGCGctctggaggagagtctggccaGTCCACAccgcattccaggatgggagtaaaacgtgctctggtttattggcatttctttaaaccaatcacaatcgtcctgggcagtgctaagcgctgtacggagcaacggcgcctctgcaaaatagcctcgggaaggaacttgttttggtggaacgtgtacattcaaaagttgttttagtcgtgcaacagaaaactcagattggacagatagtccagctagctgtctggatttaacctgcagagatctgagaaaaggtcaACCATAGTTCTCAtaaaatcgaccggagtttaaaatgccaacacaaaggaagcggaaggtgacggataTCCAGCCTAAATGTAGGTCTGGgtgatatggcctaaaaataaaatccccgattttttcaaaaaaaatccaatttaagatttaaatcgatttttttctccctctacttaaactcaatctgcagatgacaaagaaattgttttgactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>TU268129
acattttttaTGTTGGCTGGCTAGCTAGAATTCCCCTTAATCATTTGTAATTTCATTCCtcaaacagaaatacaaaacaatGCAAGTTAACTGAAGTAGTAGTACAAAAACGcacaacaaacagaaaaaatgtAAAGTACCATACGTTGCCAAAATAACAAATGTTACAGTGCAACTGCAAGCATCTGTGTATGTATCCAGTGTCACCCACTAAGCTACAACACAGGCTGAAATATCTGCACAAAATTCATAAATCAACCATGAGCCAGATAATTTGGCTCCAAGACTCAATGAacagaaaataaagagaaaacagTCTTTAGCCTAGATTTAAACAGGTATCTAAAAGACAGACACAGCTTAACCATTCAAAATGGGAAactcatttattaaaaaaaaaaaaataacatcctTTGGCTTTTGAGCAGTGTCTGTTATTGCTAACAGGACTGTACTGACAACAATAAACCGTCAATACCCTCAAACCGAATAAAACCCATCGTTGGGTGTACTGGTTGTACTATACTTTCACTGGGATGCAGTCCTTTATCAGTCCATGCTTTAATCAATCAAACATACATTCAGCCATATGTGCATCTGCTTATCCAAATTATTTGATCTTTGGTACATTTACAGCATGTCATCATCTTCTCCTCCTCCGTACATGTCTGCCAATTTCTTGAAGCGGGGTCCCCACTCATTGAGGCAGTTGTAGTCCTGGTCTCCGCTGCTCGATGAGTTCAGAGAGGAGAGGCTTCCTGCATCAGAGCCACCCCCTTCATAATCAAACACCAGCAGGGAGTCATAGGGAGGTGCTGTTGGGTCGTTGTCGGCTGCCTTCAGGTTCTgagagaggagcagagagtataTGTTATTTGACATACTTTTTGTATA

Function

NR:

description
PREDICTED: B-cadherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268127 True 2028 lncRNA 0.42 3 29344396 29347498
TU268129 False 894 lncRNA 0.40 2 29315299 29345482

Neighbor

gene id symbol gene type direction distance location
LOC120547961 LOC103372209,LOC104933668 coding upstream 461076 28817833 ~ 28854223 (+)
si:dkey-187a12.4 LOC104933667,LOC104950525 coding upstream 513923 28790784 ~ 28801376 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding upstream 525394 28787046 ~ 28789905 (+)
LOC120547521 nanp coding upstream 545220 28764397 ~ 28770079 (+)
LOC120547955 rmdn2 coding upstream 629231 28635328 ~ 28686068 (+)
LOC120547808 NA coding downstream 209765 29557263 ~ 29558335 (+)
LOC120547721 LOC103357097 coding downstream 281233 29628731 ~ 29632761 (+)
LOC120548236 LOC103357099,LOC103387711 coding downstream 299225 29646723 ~ 29655051 (+)
pcca pcca coding downstream 311914 29659412 ~ 29698143 (+)
cdt1 NA coding downstream 609222 29956720 ~ 29963090 (+)
G197525 NA non-coding upstream 21123 29293518 ~ 29294176 (+)
G197514 NA non-coding upstream 109722 29205268 ~ 29205577 (+)
G197446 LOC100696947,LOC101488034,LOC102786940,LOC102291530 non-coding upstream 423472 28889468 ~ 28891827 (+)
G197441 NA non-coding upstream 440769 28874178 ~ 28874530 (+)
G197439 NA non-coding upstream 447796 28867302 ~ 28867503 (+)
G197532 NA non-coding downstream 4208 29351706 ~ 29409987 (+)
G197537 NA non-coding downstream 12511 29360009 ~ 29365486 (+)
G197568 NA non-coding downstream 109920 29457418 ~ 29458436 (+)
G197571 NA non-coding downstream 122514 29470012 ~ 29470956 (+)
G197635 NA non-coding downstream 356589 29704087 ~ 29705013 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 137805 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 1012966 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1534258 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 1803707 27451950 ~ 27511592 (+)
LOC120547882 inpp5a other upstream 2206159 26926418 ~ 27109140 (+)
G197531 NA other downstream 927 29348425 ~ 29349928 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other downstream 171443 29518941 ~ 29619016 (+)
LOC120547658 NA other downstream 806013 30153511 ~ 30201820 (+)
G197999 NA other downstream 1886866 31234364 ~ 31234723 (+)
G198185 NA other downstream 3445790 32793288 ~ 32794661 (+)

Expression


Co-expression Network