LOC120547718 (LOC102789565,LOC100690068,LOC101471749,LOC103357097)


Basic Information

Item Value
gene id LOC120547718
gene name LOC102789565,LOC100690068,LOC101471749,LOC103357097
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 29518941 ~ 29619016 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU268202
cttccagaacagaccagtcacacacacctggaaggcatcaatcactttctgacaggtcgtgacctcttgaccccccaggtcaaaaggtcatccatcaaaatcccacataccaaagtgacagaaacctccTCCTTATATCTCTCACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGCCACCTACACTCTCGCCAACCCAAGGGCGTTCACTGAGAGCGGCCACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCAGCGCATTGTTCAATAAGCACATGGGCAGTGCTACCGGGGCTGTCGGCGTCTTCACCTATGACCTTTTCAACCCCAACCTCAACGACTACAACCACATCATGGCTGTCATGTTCTGTGCCCTATGACTGAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGATACATCTGTGACTACAATCTttatgatatgatgtataatgGAAATGAAAATTTTGTAAGAGCAAAGGCTGATGGCTCCTGCATTTCTTATCAGGGTGGTTATGCTATTGTCAGTGCTTCTGTAACCAGGTTCTAATCAGCCTTCAACATttacctgcaaaaaaaaaaacaacttaaggTCTGGGATCACTACTTCAGTACTTTTTAGTAATGTCCTGGTTCGAGGGataaagataagatagataTCAAATGCACTGACACTTAATACTAATTTGTCTTTGGCTGTAGATGATTATTGACTTCACACAGAATGAAAAC
>TU268204
GTTCACAGCCAGCCTCTTCCCCCACCACACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGGCTGCTACACTCTCGCCAACCCAAGGGTGTTCACTGAGAGCGGCAACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCACACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGCCACCTACACTCTCGCCAACCCAAGGGCGTTCACTGAGAGCGGCCACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCAGCGCATTGTTCAATAAGCACATGGGCAGTGCTACCGGGGCTGTCGGCGTCTTCACCTATGACCTTTTCAACCCCAACCTCAACGACTACAACCACATCATGGCTGTCATGTTCTGTGCCCTATGACTGAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGATACATCTGTGACTACAATCTttatgatatgatgtataatgGAAATGAAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGATACAACTGTGACTACGATCTttatgatatgatgtataatggatatgaaaataattttgtaaGAGGAAAGGCTGATGGCTCCTGCATTTCTTTTCAGGGTGATTATGCTATTGTCAGTGCTTCCATGTCAGACTCAGGTGAAGCAGTCCTGAGGGTGGATATCAGTGACATTGGCATGTATTAAGTCAGTAGGAGGAAGATCCTACTCTTGTTATGTAAGCCATATGAGCTGATCagtcattttaataaaatatttgagTATGTGTGAAGCTCAATCAACTGACACAGTTCATCACTAGCTGAAGTGGTGTTCATTAATGTACCTAAAATATGAGTACATTAAATAGTAGTTATTTCAGGTGTGATTTTAAAACGCTGATGCctaattacaaataaaaaacaagacTTGTATGTGTCCATCAAATTATGTCCTCTTTGTaagaaaataataacaaattcACTGTGTTCCTTCTGATACATAGAGATCTATTTGATACAGAACTGTTTCTGGATGTTTTGGTGCCCTACTCTGATTCTTACATTATCCAAGTTTCTGATTATCTGTGGAGGAGGCTATGTGACTCCTCCTAGATAGTCTTTGTCATTAATGCACTGTGGGGTATCTTACTTTCATTTGTGAATGTCCTCACCACATATTATCATCcaatatttattttgattttgattacTATTTCCCATGTTATATAACTGGCAGCACATAAGGCCTGTTGTGGGAGGATGTCAGGGCAGCATTTAGAGTATCCTCAAGTAGTTCATATTTATTACGTATGTATTCGGCATTACGTTTTACATGACTGTGGGAGGACACCGGAGCACCCGGAAAAATCGCAGACTTCTTTTAGGGCACATTCAGACCAAAGCAAGCGATTCGCTGCAGGGTTGTGC
>XM_039783336.1
TCTGCGAAGCTTCAGGTGGTACAACACCGGCTCTGAGTTTTGCTCGGTcgggactgtctctctgctcactcaggcgcttgagttgacttgtggagttgctgttaactacgaaattTGCTGGCGAGGTCCGGGAACAAAGGGGGGAGCTGATACTGGACAGGAGATAAGGAGGGAGTCAACTGGtgcctaaaagtcctgattaccTGAGTCAATAAAACCTGGTGTGTGACTTCACTACCACATCCTGCCTGAAACCTGGACCAACAATCTGTCCTCACCAACAactggttttgccttttttcaaCTCTGCAGATCATACAAAGTTCACAGCCAGCCTCTTCCCCCACCACACCTCATCACGATGCCTCATCGCCTCTGCTCTGTTGAGATTAAAAACAACTCTGGCTGCTACACTCTCGCCAACCCAAGGGTGTTCACTGAGAGCGGCAACTGTGAGGTCCCTCTGCCACCGATGGTGGGTCCCTACTCCCCTGCCAGCGCATTGTTCAATAAGCACATGGGCAGTGCTACCGGGGCTGTCGGCGTTTTCACCTATGACCTTTTCAACCCCAACCTCAACGACTACAGCCACGTCGTTGCCGTCATGTTCTCCGTGCCCTACGACCGAAACCTCTACTCCAACTGGTTTGCTGTGGGGATCCTTGACAGAGGAAACAACTGTGACTACAATCTttatgatatgatgtataatggaaatgaaaataattttgtaaGAGGAAAGGCTGATGGCTCCTGCATTTCTTATCAGGGTGATTATGCTATTGTCAGTGCTTCCATGTCAGACTCAGGTGAAGCAGTCCTGAGGGTGGATATCAATGACGTTGGCATGTATTAAGTCAGAAGGAGGAAGATCCTACTCTTGTTATGCAAGTCATATGAGATGATCagtcattttaataaaatatttcagtATGTGTGAAGCTCAATCAACTGACATAGTTCGTCACTAGCTGAAGTGGTGTTCATAAATGTACCTAAAATAGGAGTAC

Function

NR:

description
PREDICTED: cytolysin-3-like

GO:

id name namespace
GO:0052331 hemolysis in other organism involved in symbiotic interaction biological_process
GO:0046931 pore complex assembly biological_process
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0046930 pore complex cellular_component
GO:0015267 channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268202 False 781 TUCP 0.45 2 29595292 29596825
TU268204 True 1495 TUCP 0.44 5 29536519 29619016
XM_039783336.1 False 1010 mRNA 0.48 4 29518941 29538642

Neighbor

gene id symbol gene type direction distance location
LOC120547961 LOC103372209,LOC104933668 coding upstream 664718 28817833 ~ 28854223 (+)
si:dkey-187a12.4 LOC104933667,LOC104950525 coding upstream 717565 28790784 ~ 28801376 (+)
LOC120548038 tuba1c,LOC108255233,LOC103148207,LOC108247626,LOC106920718,LOC101079871,LOC101066234 coding upstream 729036 28787046 ~ 28789905 (+)
LOC120547521 nanp coding upstream 748862 28764397 ~ 28770079 (+)
LOC120547955 rmdn2 coding upstream 832873 28635328 ~ 28686068 (+)
LOC120547721 LOC103357097 coding downstream 9715 29628731 ~ 29632761 (+)
LOC120548236 LOC103357099,LOC103387711 coding downstream 27707 29646723 ~ 29655051 (+)
pcca pcca coding downstream 40396 29659412 ~ 29698143 (+)
cdt1 NA coding downstream 337704 29956720 ~ 29963090 (+)
nvl NA coding downstream 648772 30267788 ~ 30336160 (+)
G197571 NA non-coding upstream 47985 29470012 ~ 29470956 (+)
G197568 NA non-coding upstream 60505 29457418 ~ 29458436 (+)
G197532 NA non-coding upstream 108954 29351706 ~ 29409987 (+)
G197530 NA non-coding upstream 136335 29332515 ~ 29382606 (+)
G197537 NA non-coding upstream 153455 29360009 ~ 29365486 (+)
G197635 NA non-coding downstream 85071 29704087 ~ 29705013 (+)
G197636 NA non-coding downstream 89727 29708743 ~ 29710005 (+)
G197654 NA non-coding downstream 149460 29768476 ~ 29779051 (+)
G197679 NA non-coding downstream 350774 29969790 ~ 29977939 (+)
G197686 NA non-coding downstream 375565 29994581 ~ 30000931 (+)
G197531 NA other upstream 169013 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 341447 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 1216608 28294205 ~ 28302333 (+)
LOC120548047 adgra1,LOC103360772 other upstream 1737900 27554928 ~ 27781041 (+)
LOC120548261 LOC102312438,LOC102207415,LOC101470427 other upstream 2007349 27451950 ~ 27511592 (+)
LOC120547658 NA other downstream 534495 30153511 ~ 30201820 (+)
G197999 NA other downstream 1615348 31234364 ~ 31234723 (+)
G198185 NA other downstream 3174272 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 3343372 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 3538713 33157729 ~ 33199862 (+)

Expression


Co-expression Network