G197804


Basic Information

Item Value
gene id G197804
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 30341337 ~ 30344038 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU268472
TCGTGTTTTTACATTGAAGAGAAGGCCACCATAGATTCTCCTACACGCTCGGTGAGGGTATTCAGTAGGTTGCTAGCTGCAACCTCACTGCTAGACGCCattaaatcctacacactggtcCTTCCATTAAACATATTCAATATTTTCGGTAATGTTTGTCTTTCAACATGAAGGTCAtgatcaggggtgtcaaactatCGGCCCAAGAGCCAGATCCTGCATGTCAAACAATTTTATAGGGTTCCActtcatacatttatttttacatctgGCTCACAAATTCAGAGAGGTTGACTTTGCGGACAGACAGTTACAAGAGGAGGATGCTCTCCCTAGCTAATTTGGGTTTGCGGCCCCTGGTCTAAATGCTGATTCAAAGCCTTCTCTATTGCCAGGAATATCATTATAAATAGAAGAAAGTAAGTCTTTTTTatcttcatttattttattggctTTAAAGTATTCCAAATTAACtgtattcaatttttttttaattgtggaAACAGTCAAATCAATAGCAACCCAATGTAATTTTGTTCACGGTTGCTAAGTCTCCAAATTTCAAACTAACACAGACGACAGCTGCAGCAGCCCTGCTTCTACAACTTAGatacaataacaaaaaaggACAATAAAGTGATTAGGTGATGTTTATCAAACACATTTTCTATTCTTGGCAGTTTTTCGATCAAAGAAATGCATTCATAAAATTGAAATTAAGACCACAAACGGCGCAGAGAATCGAAAATAAAGCTCTGAGGCACTGATGAGTAACACACATTCAACCTTAAACTAACTTGTTATAAACAGTTTGTATGGAAGCACGACAACATGTTGTATAATGGTAGATTAAAGTGTTGATGATAAAGAgcagttggggaaaaaaaggttaACTACTACATTTAACATAAAGCAACCGATGAAAGCTTCCCCATAAACTCAACACATACGGAGGGATCTTAATGAGTGGATTCACTCAGAGTTCAActttggcacacacacacacacacacacacacacacacacacacacacacaaccaatagCAAAGATGCTTTCATGTTGTTGACCTCTAACTGTAGAGTCCAAAATGCAAAATGGAGGGAGACATGTCTTcagttaaataaaattaatcacTGTGGCAGAATACAAACTGCAAAGCAGACACCTTTGACATGGTTTGCACTCAGTTGTCACACAGGAGTAGATGGTACAACTGTGGGCTTATATTATGTTGGCTGTGAAGCTATCTTGATAGCTAATTTCTGGGGCTGGTTGCACAAAgacatctaaaaaaaacattcccatctAAATCTGTTCTGAGTGATTTGAAAAGTGGACAGGTTGGCAATGCACCCAGGATGCATTGAAATCTGATCACTGAAACCACATTTGGAGGTAGCAAttctgtatcgatacacagacgccaagtatcgatctattattatatatgtgttggtgtTTTTCTGCTtcacaatcccattttgcagcaataacatTGATAGGAGATGAACAGACGAAGAcatttatcttttcttttttttttaaagatttattttgggggcttttcccttaattatagtgacagtggatagacatgaaagggggagagagaagggggatgacacgcagcaaagtgCCGaaggttggattcgaacccgggccactgcaggactcagccaacatggggctcTTAACTgtgtgagctagaggccgccccagacATTTATCTtttaagataaaacagatgttgacaaagtttccttttggggacatcatttaaaattgggaaaaatttaaagttggaaaaaaggtaataaattgcaatatgtttaaaatagcAGTAATATCGTATcgcgatgatatcgtatcgtgaggcctctggtgattcccacccctaaggTAGACAGGTCTTGTTTTGCTCCGACTAATGCAAACAGATGCACGTCTTCCAGCAGTCTGTTCATATTTCGTTGTTTGGCGTTGTGCAGTGCACATTAGCACACCAGCTAGAATTTGGGGGTCGTTTTAAactaaagtattggacaaattgaaGAGTGATTTTGATTCATCCTCAGGGCGACAATAATatgtgtaccaaatttcataaCAATTCAACCATCCAGTTATATGTATTTTACGAACGAGTAAAAGTATAACATTAGACATCTTAAGTTGAAGTATTTGTTTGATCAGAGCCAAAGGCGTTGTGCAACCAGCCCTAGCTACTGCCTAATCACACTAACAAACAGAGTTTTTTTAATCTAACGTCTCCAGTTTTTTGTCTTTAGGATAACAAATATCTTTGTTCTCTTCCTTGGAGGAAAAGCACTTTCTCACAATGTCCACCTTTTTTACCCATGTTGATTGTATTAATATGCAGAAGCGGTTTAGTTTATGGGATGGTGAGCGGGGGGGTGCCGTTATGGTGGATACTGCAGCTTTGTTCCAGAGAAGCTTTCAGTCGAGTTACTCCTGCTTGACATCTCCGGTCAGCTTCCTCTTGACTCGAGAGTACGGGCTCAGTGCATCGTCCATGATGAAGTCGAACAGGACCTTCAGCCACGATGTATACTGAGGCAGGTCATCATAATACTCTGCTGCTATCTTCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268472 True 2614 lncRNA 0.40 2 30341337 30344038

Neighbor

gene id symbol gene type direction distance location
nvl NA coding upstream 5177 30267788 ~ 30336160 (+)
cdt1 NA coding upstream 378247 29956720 ~ 29963090 (+)
pcca pcca coding upstream 643194 29659412 ~ 29698143 (+)
LOC120548236 LOC103357099,LOC103387711 coding upstream 686286 29646723 ~ 29655051 (+)
LOC120547721 LOC103357097 coding upstream 708576 29628731 ~ 29632761 (+)
sertad2b sertad2,LOC104932742 coding downstream 162016 30506054 ~ 30600609 (+)
slc1a4 slc1a4,LOC102791775 coding downstream 281592 30625630 ~ 30671184 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding downstream 367535 30711573 ~ 31005023 (+)
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding downstream 839282 31183320 ~ 31198691 (+)
LOC120547952 rims1,LOC102777706,LOC102298248 coding downstream 998921 31342959 ~ 31493220 (+)
G197803 NA non-coding upstream 2125 30338776 ~ 30339212 (+)
G197761 NA non-coding upstream 171426 30169444 ~ 30169911 (+)
LOC120547657 NA non-coding upstream 190621 30146823 ~ 30150716 (+)
G197739 NA non-coding upstream 211114 30129885 ~ 30130223 (+)
G197695 NA non-coding upstream 274808 30064770 ~ 30066529 (+)
G197843 NA non-coding downstream 53029 30397067 ~ 30397289 (+)
G197845 NA non-coding downstream 67870 30411908 ~ 30412212 (+)
G197847 NA non-coding downstream 68879 30412917 ~ 30413144 (+)
LOC120548213 NA non-coding downstream 86562 30430600 ~ 30437159 (+)
G197856 NA non-coding downstream 93248 30437286 ~ 30438374 (+)
LOC120547658 NA other upstream 139517 30153511 ~ 30201820 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 722321 29518941 ~ 29619016 (+)
G197531 NA other upstream 991409 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 1163843 29112688 ~ 29177494 (+)
ccnj ccnj,LOC102785723 other upstream 2039004 28294205 ~ 28302333 (+)
G197999 NA other downstream 890326 31234364 ~ 31234723 (+)
G198185 NA other downstream 2449250 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 2618350 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 2813691 33157729 ~ 33199862 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 3637473 33981511 ~ 34008003 (+)

Expression


Co-expression Network