G198002


Basic Information

Item Value
gene id G198002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 31240945 ~ 31242282 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU268686
TGCACTttacaattaaaaaggaacacagAAATAACAGACAGTAAAACAATTGAACAGCATTAAAGcagtaataataaacaatacaaaaccagCAACATAAGAGAATAAGTGAAAAAAGGGTTGTTTGTAAAGGATGCAGAAAGGATAGCGTGCTATGGTTTGCTGTAGTATAACAAGTCAACTGAGTGGGGCACGGTAGGAGAATGCTCTATTATTTTGTTCACTAGGGGAATGACCAGCGGTCAGCACATACCGGTGTATATGGTGTAATAATCTATATCCATGACATTTCACTTCCCGGGATTGCTCagttgccgccggaaaatccactggatgtccctcttttcagcaggatgtccgtttccttcagCTTTCTTTCAGtcgtaattttaaactccggtggatttgtgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatcagagttttcggtTGCACAACGAAACAaccttattggtttaaagaaatgccaataaaccagagcatgtttttttctcccatcctggattgctgtgtggactagccagacccggtctggcaatgcgagccTAATGGTGTAATAAGCTCCGATAAATAAGGTGGTGCGAGTCCATGCAGGGCCTTATATGTTAAACGAAGAACCTTAAAATCAGCTCTAGCTTGCACTGGGAGCCAGTGAAAAGAGGCCAGAACGGGTATTATGTGATCATATTTTCTACTTTTTGTCAGGATTGTGGCTGCAGCGTTCTGAGCAAGTTGAAGGCCTCTAGTGGCACAATTTGGaagaccagaaaaaaaaaaaataaaaagacattgCAGTAAGTCGGggagacacaaatgcatggattACAGGATCATTGTGGGAGTCCCGTAAACAAAATGTACTGGTTAAACTACATTGTGTGAAACAGTATGATATCTGCGTTCTGCACTGAAATGGGAATTGACAGAAAAATACAACATATAGCATTCCTCTCAGCTGCTGGTTGAGTTCCTGAGCCAGGCAGTATAAACATTCCCACTCCCGGCCACCAGGGGGCAGACGCCGAGAGTGTAGGATGTTTACACTTCCTGGATCTCAGAGATCAAAAGGGCAACTTTACACCGTATATGTATGAAGATAGTTGACATTAATGTTAATAttctaaaaaaattaattaaaaaaacattcaagACCTGAGGACGTCTTCAGAACAGAAACCAGTGTGA

Function

GO: NA

KEGG:

id description
ko04964 Proximal tubule bicarbonate reclamation

RNA

RNA id representative length rna type GC content exon number start site end site
TU268686 True 1250 lncRNA 0.42 2 31240945 31242282

Neighbor

gene id symbol gene type direction distance location
ogfrl1 ogfrl1,LOC104917660,LOC103363704,LOC100701482 coding upstream 42254 31183320 ~ 31198691 (+)
LOC120548109 LOC102195401,LOC103353517,LOC102300597,LOC106939791 coding upstream 235922 30711573 ~ 31005023 (+)
slc1a4 slc1a4,LOC102791775 coding upstream 569761 30625630 ~ 30671184 (+)
sertad2b sertad2,LOC104932742 coding upstream 640336 30506054 ~ 30600609 (+)
nvl NA coding upstream 904785 30267788 ~ 30336160 (+)
LOC120547952 rims1,LOC102777706,LOC102298248 coding downstream 100677 31342959 ~ 31493220 (+)
bcl11aa bcl11a,LOC103363701,LOC102779517 coding downstream 270582 31512864 ~ 31573621 (+)
fancl fancl coding downstream 1202805 32445087 ~ 32483666 (+)
LOC120547814 NA coding downstream 1414704 32656986 ~ 32659866 (+)
LOC120547622 NA coding downstream 1419805 32662087 ~ 32666672 (+)
G197991 NA non-coding upstream 34589 31206091 ~ 31206356 (+)
G197983 NA non-coding upstream 38472 31200856 ~ 31202473 (+)
G197982 NA non-coding upstream 40945 31198955 ~ 31200000 (+)
G197958 NA non-coding upstream 286674 30950360 ~ 30954271 (+)
G197854 NA non-coding upstream 566463 30674212 ~ 30674482 (+)
G198004 NA non-coding downstream 9107 31251389 ~ 31251871 (+)
LOC120547953 NA non-coding downstream 167241 31409523 ~ 31412035 (+)
G198082 NA non-coding downstream 382726 31625008 ~ 31625225 (+)
G198089 NA non-coding downstream 506391 31748673 ~ 31748908 (+)
G198090 NA non-coding downstream 610008 31852290 ~ 31852614 (+)
G197999 NA other upstream 6222 31234364 ~ 31234723 (+)
LOC120547658 NA other upstream 1039125 30153511 ~ 30201820 (+)
LOC120547718 LOC102789565,LOC100690068,LOC101471749,LOC103357097 other upstream 1621929 29518941 ~ 29619016 (+)
G197531 NA other upstream 1891017 29348425 ~ 29349928 (+)
LOC120548242 ccdc85a,LOC104955469,LOC102783086,LOC102310250,LOC102209339,LOC100696856 other upstream 2063451 29112688 ~ 29177494 (+)
G198185 NA other downstream 1551006 32793288 ~ 32794661 (+)
G198245 rab1a,LOC104962072,LOC102231865 other downstream 1720106 32962388 ~ 32965074 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other downstream 1915447 33157729 ~ 33199862 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 2739229 33981511 ~ 34008003 (+)
LOC120548523 NA other downstream 3652901 34895183 ~ 34948460 (+)

Expression


Co-expression Network