LOC120547847


Basic Information

Item Value
gene id LOC120547847
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 33920679 ~ 33921645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU269268
gtgctcatcaGCAGGGGCGTGGCTCTACAGGCATTACCAGGCACACCTGACTTCCATTCACAATCAAGCTCAGTACAAGAAAACCGGCTCTCCTCTCACTCATCGCCAGATTGTTTTTCTGCTCCCTATGTGCACCTGCCAGAACTGAGCCTGCCTTCCTGCTGATCATCTGCCACAGCCTGCCACTTATTCCTCACCACCAGACACCATCTGCTTTCATCGGGATTGTCTCCTCACCACCTTGATTAACTCTCTCTTACTTGCAAGTAATGAGATAAAATAAACCTAACTACTATCCATTGTGCCTGTGTCTGAATCTGCTACTGGGGTCCAAACTGGGagcaaatcataacaggaggattaaaaaacatgatggactcttcagaagaggtcattatcttcacttgagtcaccggatgcca
>XR_005637108.1
TTACCAGGCACACCTGACTTCCATTCACAATCAAGCTCAGTACAAGAAAACCGGCTCTCCTCTCACTCATCGCCAGATTGTTTTTCTGCTCCCTATGTGCACCTGCCAGAACTGAGCCTGCCTTCCTGCTGATCATCTGCCACAGCCTGCCACTTATTCCTCACCACCAGACACCATCTGCTTTCATCGGGATTGTCTCCTCACCACCTTGATTAACTCTCTCTTACTTGCAAGTAATGAGATAAAATAAACCTAACTACTATCCATTGTGCCTGTGTCTGAATCTGCTACTGGGGTCCAAACTGGGagcaaatcataacaggaggattaaaaaacatgatggactcttcagaagaggtcattatcttcacttgagtcaccggatgccacaatcttctgaacatagtcctactgagaaatccagagagagttgtgtggagctgatagtcttcattagctttgtagcaactcatttggcaatggtttGAACGTTACAGATGTTCATTAGTATAAAatagttatgcactaaagctttaaatatagAACTGTTACATACTCTTCTTGGCCTAAACCCCAACATTCAGGTTTGATGGGCATGTGGTTCTGTCCATTCCTGGTGGCATCCATTACTGTCCAGTATTTCATTCTAActggtgctgctgctggctgaAAGTCTTTTATTCATAAACCCTTAAAACTACAGACTGTATTTAATGTTGGATATATGTTTGCTTAACTTTCCCATATCTTGTGTGTTTTCTTGAGgaaaaagtcaatcaaaacGTGAAAAGTACAGTTGCAGTGTCTTTCATTAAAATTTTTGGTGACAGTCCCTTAA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU269268 False 422 lncRNA 0.48 2 33920679 33921196
XR_005637108.1 True 838 lncRNA 0.41 2 33920712 33921645

Neighbor

gene id symbol gene type direction distance location
ctu2 ctu2 coding upstream 183687 33719799 ~ 33736992 (+)
trnaw-cca_27 NA coding upstream 218322 33702286 ~ 33702357 (+)
LOC120547725 LOC104935158,LOC103367215 coding upstream 413197 33480401 ~ 33507482 (+)
nt5c2a LOC101476423,LOC102302397 coding upstream 456070 33425351 ~ 33464609 (+)
LOC120547582 NA coding upstream 507978 33395432 ~ 33412701 (+)
chchd1 chchd1 coding downstream 48893 33970538 ~ 33976543 (+)
zswim8 zswim8 coding downstream 96732 34018377 ~ 34082623 (+)
ndst2a ndst2 coding downstream 170492 34092137 ~ 34124873 (+)
si:dkey-191g9.7 NA coding downstream 208358 34130003 ~ 34138259 (+)
polr1c polr1c coding downstream 220891 34142536 ~ 34158774 (+)
G198505 NA non-coding upstream 21502 33895870 ~ 33899177 (+)
G198488 NA non-coding upstream 68768 33851677 ~ 33851911 (+)
G198369 NA non-coding upstream 203728 33716697 ~ 33716951 (+)
G198352 NA non-coding upstream 310089 33610192 ~ 33610590 (+)
G198351 NA non-coding upstream 322655 33592593 ~ 33598024 (+)
G198520 NA non-coding downstream 56285 33977930 ~ 33978182 (+)
G198533 NA non-coding downstream 89839 34011484 ~ 34012017 (+)
G198534 NA non-coding downstream 91202 34012847 ~ 34013380 (+)
G198536 NA non-coding downstream 94458 34016103 ~ 34016368 (+)
G198603 NA non-coding downstream 276617 34198262 ~ 34199378 (+)
slc2a15a LOC103367959,LOC104935160,LOC103476520,LOC106961144,LOC103155793 other upstream 720817 33157729 ~ 33199862 (+)
G198245 rab1a,LOC104962072,LOC102231865 other upstream 955605 32962388 ~ 32965074 (+)
G198185 NA other upstream 1126018 32793288 ~ 32794661 (+)
G197999 NA other upstream 2685956 31234364 ~ 31234723 (+)
LOC120547658 NA other upstream 3718859 30153511 ~ 30201820 (+)
si:ch211-51a6.2 LOC104924867,LOC103357113,LOC100694100 other downstream 59866 33981511 ~ 34008003 (+)
LOC120548523 NA other downstream 973538 34895183 ~ 34948460 (+)

Expression


Co-expression Network