LOC120547579


Basic Information

Item Value
gene id LOC120547579
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23099915 ~ 23110571 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783055.1
GTTAATAAAAGGAAATCGAAACTTAAGGCATTGGTACAAAGTTGATCTAAAATCAACTTAATCGAAGCAGATTGCGGATAGGCTATGGAGGACTATGAGGAATAGTTAAGATATGAAATGAAAACGTTACACTTTATTCTCACAGCTTTTGATTAGAACAGGAATTCCGACAGCTTCGTCATTTATGATGGAAACTGGAAACTATGTTGCTAAACTACACGAGTACGCACAGAAAACAAGATCTGCGCTGCTTTTTGAGGACCGCTCTGTTGGCCCTGTCCATGATATAACATTTATCGTAAGAGCAGTTCTGGATGGTAAGGCGTATCCTGATGGAGTGGGGAAGAACAAGAAGGAAGCCAGACAGAATGCAGCTAAAAATGCCCTAAAATGCTTGTTGGAGACTGAACATCAGGACTCAGTTAAAACCactgCAGATGATAACTGTTCATCAGCTCAACTAAAAGAGGAACTTAATCATAATGTTTCTGATATCTGTAATAAGATAAGACGCCTCAATCTGAACTCACAGCCTTACGGaaacaaacagagacaaaggGAGAAAAATACAGAGACAAATTTCATAGGATTCGTCAATCACTACTGTCAGAAAAAACGCCTATGCCATTCTTACATTGAGGAAAGGAGAGACGGCCCACCTCATAACCCTGTATTTTTCTACAAAGTACTGATAAACGGTAAGGAGTACCCTTTAGGTGAGGGTAAGATTGTAAAGGAAGCCAAACAAAAAGCAGCTCAGCTGGCCTGGTCTGCTCTTCAAGAACAGTCAGACTGGGACAGCAAGGTGTCCGTCAGGTCAACAGTGTCCGAAGATGCTACACTACCTATGTTCTCAGCGCAATCAACTACCCTGGAGTCCCATGAATCATCATCACAAAGCACATCAATGAGCACAAGTGGATCAATAATATTCACTGATTCATCAAACCCTCCCAAGGCTCAGATTCCCATAAGGTCAACTGCGTCTGAAGATGATGCACCAAGCGAGTTGTCAACTTCACTGGAGTCTCTTTCATCGTCACAAAGTATGTCAACGGGTACAAGTGGCTCAGGAATATTCACGGATTCATCCAACTCTTCCGAGGATCAGCATGTTGTCAAAGACAAGAATATGGGAAAAAGTCAGAATGAGACATCCATCCAGTCAagGTTTACTTCAGAATTTGATTCCATAGAGAGTCTCGGCAGTGGAGGTTTTGGTCGTGTTTACAAAGCAAGAGATAAACTCCTGAAGAAGTATTATGCTGTAAAGATTGTCTGCTGTGAAGAGAAAGCTCTTCGAGAGGTGGGGACATTATCAGACCTCCTCCACCGTAATATCGTCAGATACTACACATTTTGGATGGAGGCTTCAAGATACCAAGGGGAGCTTTCAGCAGGCAGTAACAGCTCTGCCCAGTCTTTAGACAATTCATCGGCAAAGTACCTCTATATTCAGATGGAGTTATGTGACACCAAAACCCTTAAAGACTGGATTGATGAGAAGAACAGTCAGTCTCCCCAAGACTCCAAGAGAAGAGAACAAAGTCTCAGCATTGCTCAGCAAATAGTTAGTGGAGTGGAATATATTCACTCCATGATACACATCCACAGGGACCTTAAGCCTGAAAACATCCTGTTTGGGCTGGATGGAGTAGTGAAGATTGGGGACTTTGGTCTGGTCACCAGAGATGATGTTGATGACTCTGCATTGATGGACAGAACAGAGAACGAAGGAACCACATCTTACATGGCTCCTGAACAAAGGGAGAAGAACTATGACCGAAGAGTGGATATATTTGCTCTGGGCTTGATTTACTTTGAACTCCTTTGGAAACTCTCTACTGGCCATGAAAGAGGAGTGGTTTGGAATGATGCCAGAAGTCAGAAGCTCCCTGAAGATTTTTTACAGACTTTTCCCCAAGAGaATCAAATCATCAAGTGGATGCTGTGTGAGAAGCCAGAAGACCGACCCGATGCCAGTATACTGAAGGCAGAGCTGGAGAAGTGGGCTAAGACATTCAACGTGCAAAATTTGTGTCAGGAAAATGCAACTGTCTGATTATCAAAAGCATTAGTGACAAGTCACAAGCGGGTATGGAAATCTGGCTCTTCTGATGCCTGTGATTTAATCAAATTATCTGATATACTGGTGTTAATATGATGTTAGTAATATTGTATGAAACTGGTTTAAAATGGTTAACGTACTGCACTTTTATAGTGCTTTACCTGGGACTTTAACTCACACTCCTATGGCAATGGACGACAGTTTGGGGTTTTGCTCAAAAGCACTTCAAGATGCAGACAGGAAGACAAATCATTAACCATGCAATTGATGAACTACCTAAGAAGAGGGCATAACATTATGGGTTTTGTATTCAGGAAACGAAACATGAAATCAAATTTTATCATGATTTTAAAAAGTAACTGACATGAAATCACATCTGTCCAGCTTTTGTCCGAAATAATCATGTGCCGGCAATTTCTGCGTCCACAGTTTACAGTTTATTCTATGCTGAAACTCgttaaatgtattgtttaaaCTTGTTTTTCTCATTAATTTACTATTAAAAACTATAATGGAGCAAATATTGTTGCGATGAATTCAGGGATACTGTGATGAATGAGTGCCTTAGTTCCCATTTACTTTTCAGTGATCCATTCAGTGATGTTGATCACAGTGCATTGTCCCAGAAAAAAAGCAATTAATGTTAAACTTAGAGTACTTCACAGCATTCATTATGTTATTATGCAAATTGATGTGGGTGATATCACAAAATGGGAGTCTTATCTGATACCAGTATAACACGGTCAGAATCACCAATATTGATACCAATACTTTAATATTAAAACTGTCTGCAGta
>XM_039783056.1
TATGACGTTAATAAAAGGAAATCGAAACTTAAGGCATTGGTACAAAGTTGATCTAAAATCAACTTAATCGAAGCAGATTGCGGATAGGCTATGGAGGACTATGAGGAATAGTTAAGATATGAAATGAAAACGTTACACTTTATTCTCACAGCTTTTGATTAGAACAGGAATTCCGACAGCTTCGTCATTTATGATGGAAACTGGAAACTATGTTGCTAAACTACACGAGTACGCACAGAAAACAAGATCTGCGCTGCTTTTTGAGGACCGCTCTGTTGGCCCTGTCCATGATATAACATTTATCGTAAGAGCAGTTCTGGATGGTAAGGCGTATCCTGATGGAGTGGGGAAGAACAAGAAGGAAGCCAGACAGAATGCAGCTAAAAATGCCCTAAAATGCTTGTTGGAGACTGAACATCAGGACTCAGTTAAAACCactgCAGATGATAACTGTTCATCAGCTCAACTAAAAGAGGAACTTAATCATAATGTTTCTGATATCTGTAATAAGATAAGACGCCTCAATCTGAACTCACAGCCTTACGGaaacaaacagagacaaaggGAGAAAAATACAGAGACAAATTTCATAGGATTCGTCAATCACTACTGTCAGAAAAAACGCCTATGCCATTCTTACATTGAGGAAAGGAGAGACGGCCCACCTCATAACCCTGTATTTTTCTACAAAGTACTGATAAACGGTAAGGAGTACCCTTTAGGTGAGGGTAAGATTGTAAAGGAAGCCAAACAAAAAGCAGCTCAGCTGGCCTGGTCTGCTCTTCAAGAACAGTCAGACTGGGACAGCAAGGTGTCCGTCAGGTCAACAGTGTCCGAAGATGCTACACTACCTATGTTCTCAGCGCAATCAACTACCCTGGAGTCCCATGAATCATCATCACAAAGCACATCAATGAGCACAAGTGGATCAATAATATTCACTGATTCATCAAACCCTCCCAAGGCTCAGATTCCCATAAGGTCAACTGCGTCTGAAGATGATGCACCAAGCGAGTTGTCAACTTCACTGGAGTCTCTTTCATCGTCACAAAGTATGTCAACGGGTACAAGTGGCTCAGGAATATTCACGGATTCATCCAACTCTTCCGAGGATCAGCATGTTGTCAAAGACAAGAATATGGGAAAAAGTCAGAATGAGACATCCATCCAGTCAagGTTTACTTCAGAATTTGATTCCATAGAGAGTCTCGGCAGTGGAGGTTTTGGTCGTGTTTACAAAGCAAGAGATAAACTCCTGAAGAAGTATTATGCTGTAAAGATTGTCTGCTGTGAAGAGAAAGCTCTTCGAGAGGTGGGGACATTATCAGACCTCCTCCACCGTAATATCGTCAGATACTACACATTTTGGATGGAGGCTTCAAGATACCAAGGGGAGCTTTCAGCAGGCAGTAACAGCTCTGCCCAGTCTTTAGACAATTCATCGGCAAAGTACCTCTATATTCAGATGGAGTTATGTGACACCAAAACCCTTAAAGACTGGATTGATGAGAAGAACAGTCAGTCTCCCCAAGACTCCAAGAGAAGAGAACAAAGTCTCAGCATTGCTCAGCAAATAGTTAGTGGAGTGGAATATATTCACTCCATGATACACATCCACAGGGACCTTAAGAGTCCGCTACAGAAGCGCAGGAGGAGGGGATGGCCCGACtccatggaatacaggatagcatcaaataccctaccattagataactgcagaacacagtgtaaataactaaatatcggtctt

Function

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG:

id description
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783055.1 True 2864 mRNA 0.41 17 23099921 23110571
XM_039783056.1 False 1750 mRNA 0.43 14 23099915 23105789

Neighbor

gene id symbol gene type direction distance location
LOC120547580 NA coding upstream 5675 23084932 ~ 23094240 (+)
gpatch11 gpatch11,LOC102790129,LOC102788696 coding upstream 16009 23080979 ~ 23083906 (+)
vit vit coding upstream 67783 23011389 ~ 23032132 (+)
LOC120547567 LOC104953149,LOC103387627,LOC103374175 coding upstream 90696 23002004 ~ 23009219 (+)
spast spast,LOC103374668 coding upstream 117312 22978152 ~ 22982603 (+)
LOC120547578 NA coding downstream 2088 23112659 ~ 23126098 (+)
LOC120547586 ggps1,LOC102790345 coding downstream 192633 23303204 ~ 23319036 (+)
LOC120547587 ggps1,LOC102790345 coding downstream 226810 23337381 ~ 23351721 (+)
gpr137ba gpr137b,LOC104924458,LOC103372484 coding downstream 377663 23488234 ~ 23494167 (+)
tsnax tsnax coding downstream 438569 23549140 ~ 23557843 (+)
G196028 NA non-coding upstream 65124 23032452 ~ 23034791 (+)
G196017 NA non-coding upstream 109213 22990433 ~ 22990702 (+)
G196016 NA non-coding upstream 110025 22989684 ~ 22989890 (+)
G195973 NA non-coding upstream 135785 22963967 ~ 22964130 (+)
G195968 NA non-coding upstream 175253 22922776 ~ 22924662 (+)
G196036 NA non-coding downstream 25875 23136446 ~ 23144652 (+)
G196057 NA non-coding downstream 36241 23146812 ~ 23147635 (+)
G196111 NA non-coding downstream 79029 23189600 ~ 23190156 (+)
G196124 NA non-coding downstream 147565 23258136 ~ 23261055 (+)
G196140 NA non-coding downstream 243401 23353972 ~ 23354341 (+)
tasp1 tasp1 other upstream 407311 22647914 ~ 22692604 (+)
kif16bb NA other upstream 915423 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 1584787 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 1767338 21318610 ~ 21332577 (+)
G195518 NA other upstream 2346106 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 451712 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 708343 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 1247355 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 1257383 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1453979 24564550 ~ 24569167 (+)

Expression


Co-expression Network