LOC120547586 (ggps1,LOC102790345)


Basic Information

Item Value
gene id LOC120547586
gene name ggps1,LOC102790345
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 23303204 ~ 23319036 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783066.1
CGCCCATAGGATGGCACAGGGAAGGGTAACGCCCAAGCAGCATCGGATTGGCTGGTTGAGGAGAAAAATATCCATGGTACGAAATCGTCCTACTGGATTGTTctcacagagagaaaaaaccTGCTAAAAACTACAACCCCCAGCTTTGCAAcagatgtATTTGGGGGAACTTGAAGCAATGGATGGCGACTCGGAAGCCCCCTCTGGGCGAATTCTTCTGGAACCGTACAAGTACTTGTTGCAATTACCAGGAAAGCAGGTGAGGACAAAACTCTCCCAAGCATTTAACCACTGGCTCAATGTTCCAGAGGACAAACTGCAGGTGATCATCCAGGTGACTGAGATGCTGCACAACGCCAGCTTGCTCATAGACGACATCGAGGACAGCTCCAAGCTGCGGCGAGGCTTCCCTGTGGCCCACAGCATCTATGGCATTCCCTCCGTTATCAACTCGGCCAACTACGTCTACTTCCTGGGGTTGGAGAAAGTGCTGACCCTGGAGCACCCTGAGGCTGTCCGAGTGTTTACCCGGCAACTGCTGGAGCTACACCGTGGTCAGGGTCTGGACATCCACTGGAGGGACACCTACACCTGTCCCACTGAGCAGGAGTACCGCAACATGGTGCTACAGAAAACTGGAGGGCTCTTTGGTCTGGCTGTGGGCCTAATGCAGCTCTTCTCAGATTGGAAACAGGACCTGAAACCCCTTCTGGACACACTGGGTCTCTTCTTCCAGATCCGTGACGACTACGCGAACCTGAGCTCTCGTGAGTACAGCGAGAACAAGAGCTTCTGCGAGGACCTGACTGAGGGAAAGTTCTCTTTCCCCACCATTCACGCCATATGGTCGCGTCCAGAGAGCACTCAGGTGCAGAACATCCTGAGGCAGCGCACAGAGAACATGGACATCAAACGATACTGTGTGGACTACCTGGAGAAGGTCGGCTCGTTTGCCTACACCCGTCAGACTCTGCGAGACCTGGAGGAGGAGGTCTACCGTCTCATCGGGGAGTTTGGGGGAAACCCTCAACTGGAGAGCCTCGTCAAACACCTCAGCCAAATGCATCGTGAGGCTGAAGCCGCAGCAGAGTCCAGTACTGAGCCACACTCCAACCAAAACCACTGACCTCATCCACCATAACTAACATACTAGCCCTGCACACTCCACTAGCACAGAAGCTTTGCTAATACACTGATGCAGATATTACCAAaagctcaacacacataccGGTATGTTACATTCACAAACTATTCAATGAGTTACAATTCATCATTAAACTTGAGAATTCTGGTAGCCAGCTCTGACTGCATTAAGCAGCCATGTACGAGCCAGCAAAGCAGCCCCAAATGTTGCCTTTGTTTTGTGTGCTGAATGGCATCCTTCATGTAACAAAATACACATCACCAATTTTTGTGTCCAATTGTAGCTGTGCAGtcaatggaataaaaaaaaaaaaatcttggttTTATGTTATAAACAACAAGATGGCAATACTCAAAAGCCTTCCTTTTGATGTGCACTACAGTGCatatacatgtattttttttattttagcctcTAAATGAAAATGGTTTATCTAGAGCAGAGTGAATGCTGGGTGTGTTTTTTCTAAAGTCCCTGTTTAAATAAGATGTCTTGAGTGTATGACGTGTGATTTGGGGATCCTTAATTATTAACCCGCCAGAGTGCCAATCCTGCAGAAAAGACCTCTGCAACTCAATTGTCTACTTGTTATATAACATGCTGGCATTGTATGCAAAGTAGTGCTCATGCTTTTTATGCATCtttatataaaaacattgttgATGTTTTGGTTTATTGCAGACTGTGTTTCCATCTAGTTCAGATTTACATTTCAAAATTTATTAGGGTGATTCAGTTATATTTGTAAGTAGACACTGTGCTGCAGTTAAGAACATCTTTGCATctattgaataaaaaaagagaacctGTGG

Function

symbol description
ggps1 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1).

NR:

description
PREDICTED: geranylgeranyl pyrophosphate synthase

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00804 GGPS1; geranylgeranyl diphosphate synthase, type III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783066.1 True 1956 mRNA 0.46 5 23303204 23319036

Neighbor

gene id symbol gene type direction distance location
LOC120547578 NA coding upstream 177106 23112659 ~ 23126098 (+)
LOC120547579 NA coding upstream 192633 23099915 ~ 23110571 (+)
LOC120547580 NA coding upstream 208964 23084932 ~ 23094240 (+)
gpatch11 gpatch11,LOC102790129,LOC102788696 coding upstream 219298 23080979 ~ 23083906 (+)
vit vit coding upstream 271072 23011389 ~ 23032132 (+)
LOC120547587 ggps1,LOC102790345 coding downstream 18345 23337381 ~ 23351721 (+)
gpr137ba gpr137b,LOC104924458,LOC103372484 coding downstream 169198 23488234 ~ 23494167 (+)
tsnax tsnax coding downstream 230104 23549140 ~ 23557843 (+)
map10 NA coding downstream 443372 23762408 ~ 23765382 (+)
ntpcr ntpcr,LOC103137650 coding downstream 447567 23766603 ~ 23770420 (+)
G196124 NA non-coding upstream 42149 23258136 ~ 23261055 (+)
G196111 NA non-coding upstream 113048 23189600 ~ 23190156 (+)
G196057 NA non-coding upstream 155569 23146812 ~ 23147635 (+)
G196036 NA non-coding upstream 158552 23136446 ~ 23144652 (+)
G196028 NA non-coding upstream 268413 23032452 ~ 23034791 (+)
G196140 NA non-coding downstream 34936 23353972 ~ 23354341 (+)
G196174 NA non-coding downstream 148258 23467294 ~ 23470444 (+)
G196184 NA non-coding downstream 178132 23497168 ~ 23533059 (+)
G196195 NA non-coding downstream 224571 23543607 ~ 23543838 (+)
LOC120548378 NA non-coding downstream 551508 23870544 ~ 23874163 (+)
tasp1 tasp1 other upstream 610600 22647914 ~ 22692604 (+)
kif16bb NA other upstream 1118712 22155402 ~ 22184492 (+)
G195653 LOC102296834 other upstream 1788076 21514526 ~ 21515128 (+)
fbxo11a fbxo11,LOC104951339 other upstream 1970627 21318610 ~ 21332577 (+)
G195518 NA other upstream 2549395 20752773 ~ 20753809 (+)
disc1 disc1 other downstream 243247 23562283 ~ 23611337 (+)
klhdc3 klhdc3 other downstream 499878 23818914 ~ 23851605 (+)
LOC120547848 LOC103369904,LOC106907288,LOC107081732 other downstream 1038890 24357926 ~ 24367599 (+)
LOC120548495 ate1 other downstream 1048918 24367954 ~ 24426502 (+)
G196439 wdr11 other downstream 1245514 24564550 ~ 24569167 (+)

Expression


Co-expression Network